Job Description P23886 Confidence 100.00% Date Thu Jan 5 11:40:21 GMT 2012 Rank 5 Aligned Residues 564 % Identity 23% Template c3b5xB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of msba from vibrio cholerae Resolution 5.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	L	L	P	Y	L	A	L	Y	K	R	H	K	W	M	L	S	L	G	I	V	L	A	I	V	T	L	L	A	S	I	G	L	L	T	L	S	G	W	F	L	S	A	S	A	V	A	G	V	A	G	L	Y	S	F	N	Y	M	L	P	A	A	G	V	R	G	A	A	I	T	R	T	A	G	R	Y	F	E	R
Query Conservation
Alig confidence																																																						.	.	.	.
Template Conservation																																																						.	.	.	.
Template Sequence		Q	T	F	K	R	L	W	T	Y	I	R	L	Y	K	A	G	L	V	V	S	T	I	A	L	V	I	N	A	A	A	D	T	Y	M	I	S	L	L	K	P	L	L	D	E	G	F	G	N	A	E	S	N	.	.	.	.	F	L	R	I	L	P	F	M	I	L	G	L	M	F	V	R	G	L	S	G	F	A	S	S
Template Known Secondary structure		T										T	T	S	G	G	G	G	T	T	T	T	T	T	T												T	T	T	T	T	T					S	S	S	T	B	T	T	.	.	.	.	B	T	T	T	S	T	T	T	T									G	G	G	T	T	T	T
Template Predicted Secondary structure																																																						.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.					.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	S	H	D	A	T	F	R	V	L	Q	H	L	R	I	Y	T	F	S	K	L	L	P	L	S	P	A	G	L	A	R	Y	R	Q	G	E	L	L	N	R	V	V	A	D	V	D	T	L	D	H	L	Y	L	R	V	I	S	P	L	V	G	A	F	V	V	I	M	V	V	T	I	G	L	S	F	L	D	F	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	C	L	S	W	V	S	G	N	V	V	M	Q	M	R	R	R	L	F	N	H	F	M	H	M	P	V	R	F	F	D	Q	E	S	T	G	G	L	L	S	R	I	T	Y	D	S	E	Q	V	A	G	A	T	S	R	A	L	V	S	I	V	R	E	G	A	S	I	I	G	L	L	T	L	M	F	W	N	S	W	Q
Template Known Secondary structure		T	T	T	S	S	S	S	S																T	S	T	T	T	T	T	T	T	S									T	T	T													T	T	T	T	S	T	T	S	S	S	T	T	T	T	T	T	T	T	T	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	F	T	L	G	G	I	M	L	L	T	L	F	L	M	P	P	L	F	Y	R	A	G	K	S	T	G	Q	N	L	T	H	L	R	G	Q	Y	R	Q	Q	L	T	A	W	L	Q	G	Q	A	E	L	T	I	F	G	A	S	D	R	Y	R	T	Q	L	E	N	T	E	I	Q	W	L	E	A	Q	R	R	Q	S
Query Conservation
Alig confidence													.
Template Conservation													.
Template Sequence		L	S	L	V	L	I	V	V	A	P	V	.	V	A	F	A	I	S	F	V	S	K	R	F	R	K	I	S	R	N	M	Q	T	A	M	G	H	V	T	S	S	A	E	Q	M	L	K	G	H	K	V	V	L	S	Y	G	G	Q	E	V	E	R	K	R	F	D	K	V	S	N	S	M	R	Q	Q	T	M	K	L	V
Template Known Secondary structure		S	S	S	T	T	T	T	T	T	T	T	.	T	T	T							T	T	T	T	T	T	T	T	T	T	T	T	T											G	G	G											T	T
Template Predicted Secondary structure													.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	T	A	L	S	Q	A	I	M	L	L	I	G	A	L	A	V	I	L	M	L	W	M	A	S	G	G	V	G	G	N	A	Q	P	G	A	L	I	A	L	F	V	F	C	A	L	A	A	F	E	A	L	A	P	V	T	G	A	F	Q	H	L	G	Q	V	I	A	S	A	V	R	I	S	D	L	T	D	Q	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	A	Q	S	I	A	D	P	V	I	Q	M	I	A	S	L	A	L	F	A	V	L	F	L	A	S	V	D	S	I	R	A	E	L	T	P	G	T	F	T	V	V	F	S	A	M	F	G	L	M	R	P	L	K	A	L	T	S	V	T	S	E	F	Q	R	G	M	A	A	C	Q	T	L	F	G	L	M	D	L	E
Template Known Secondary structure			T	T	T	T									T	T	T	T	T	T	T	T	T	T					T	T	T	T		T	T	S	S	S	S	T	T	T	T	T	T	T	T																											T	T	T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	V	T	F	P	D	T	Q	T	R	V	A	D	R	V	S	L	T	L	R	D	V	Q	F	T	Y	P	E	Q	S	Q	Q	A	L	K	G	I	S	L	Q	V	N	A	G	E	H	I	A	I	L	G	R	T	G	C	G	K	S	T	L	L	Q	Q	L	T	R	A	W	D	P	Q	Q	G	E	I	L	L	N	D
Query Conservation
Alig confidence																.
Template Conservation																.
Template Sequence		T	E	R	D	N	G	K	Y	E	A	E	R	V	N	.	G	E	V	D	V	K	D	V	T	F	T	Y	Q	G	K	E	K	P	A	L	S	H	V	S	F	S	I	P	Q	G	K	T	V	A	L	V	G	R	S	G	S	G	K	S	T	I	A	N	L	F	T	R	F	Y	D	V	D	S	G	S	I	C	L	D	G
Template Known Secondary structure								S	S			S				.				B			S					S	S	T	T	S			S	S		S							S	S									T	T	T	T							T	T	S			S	S					S				T	T
Template Predicted Secondary structure																.
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.		.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460			.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.																								.	.
Query SS confidence																																						.																								.	.
Query Sequence		S	P	I	A	S	L	N	E	A	A	L	R	Q	T	I	S	V	V	P	Q	R	V	H	L	F	S	A	T	L	R	D	N	L	L	L	A	.	S	P	G	S	S	D	E	A	L	S	E	I	L	R	R	V	G	L	E	K	L	L	E	.	.	D	A	G	L	N	S	W	L	G	E	G	G	R	Q	L	S	G	G
Query Conservation																																						.																								.	.
Alig confidence																																						.																								.	.
Template Conservation
Template Sequence		H	D	V	R	D	Y	K	L	T	N	L	R	R	H	F	A	L	V	S	Q	N	V	H	L	F	N	D	T	I	A	N	N	I	A	Y	A	A	E	G	E	Y	T	R	E	Q	I	E	Q	A	A	R	Q	A	H	A	M	E	F	I	E	N	M	P	Q	G	L	D	T	V	I	G	E	N	G	T	S	L	S	G	G
Template Known Secondary structure				S	T	T	S		S	S	S	S	S	T	T						S	S					T	T								T	T	S	S	S	S			S		S	T	T						T	S	T	T	T	T	T	T	S	S	S	S		S	S					S	S		S	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	R	R	L	A	I	A	R	A	L	L	H	D	A	P	L	V	L	L	D	E	P	T	E	G	L	D	A	T	T	E	S	Q	I	L	E	L	L	A	E	M	M	R	E	K	T	V	L	M	V	T	H	R	L	R	G	L	S	R	F	Q	Q	I	I	V	M	D	N	G	Q	I	I	E	Q	G	T	H	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	R	Q	R	V	A	I	A	R	A	L	L	R	D	A	P	V	L	I	L	D	E	A	T	S	A	L	D	T	E	S	E	R	A	I	Q	A	A	L	D	E	L	Q	K	N	K	T	V	L	V	I	A	H	R	L	S	T	I	E	Q	A	D	E	I	L	V	V	D	E	G	E	I	I	E	R	G	R	H	A	D
Template Known Secondary structure													T				S	S						S		S	S			T	T	T										T	T	T	T	T	S							S		G	G	G	G	G	T		S							S	S						S
Template Predicted Secondary structure
Template SS confidence
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
		559	560	.	.	.	.	.	.	.	.	.	570	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A	R	Q	G	R	Y	Y	Q	F	K	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	A	Q	D	G	A	Y	A	Q	L	H	R
Template Known Secondary structure				S	S			T	T	T	T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		565	.	.	.	.	570	.	.	.	.	.	.	.