Job Description P23886 Confidence 99.36% Date Thu Jan 5 11:40:21 GMT 2012 Rank 71 Aligned Residues 182 % Identity 30% Template c2o5vA_ PDB info PDB header:replication/recombination Chain: A: PDB Molecule:dna replication and repair protein recf; PDBTitle: recombination mediator recf Resolution 1.61 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		L	K	G	I	S	L	Q	V	N	A	G	E	H	I	A	I	L	G	R	T	G	C	G	K	S	T	L	L	Q	Q	L	T	R	A	W	D	P	Q	Q	G	E	I	L	L	N	D	S	P	I	A	S	L	N	E	A	A	L	R	Q	T	I	S	V	V	P	Q	R	V	H	L	F	S	A	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence													.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.
Template Conservation													.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	P	G	T	L	N	F	P	E	G	.	V	T	G	I	Y	G	E	N	G	A	G	K	T	N	L	L	E	A	A	Y	L	A	L	T	G	Q	T	D	A	P	R	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	I	Q	A	G	E	T	E	A	Y	V	R	A	D	L	Q	Q	G	G	S
Template Known Secondary structure				S							S		.								T	T	S	S														S					S	S	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	B		T	T		S											T	T
Template Predicted Secondary structure													.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60															.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	S	I	Q	E	V	G	L	G	R	G	R	R	Q	L	K	V	D	G	V	R	A	R	T	G	D	L	P	R	G	G	A	V	W	I	R	P	E	D	S	E	L	V	F	G	P	P	S	G	R	R	A	Y	L	D	S	L	L	S	R	L	S	A	R	Y	G	E	Q	L	S	R	Y	E	R	T	V	S	Q	R	N
Template Known Secondary structure											T	T							T	T					G	G	G			S								T	T	T	T					S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
																																											429	430	.	.	.	.	.	.	.								.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	R	D	N	L	L	L	A	.	.	.	.	.	.	.	S	P	G	S	S	D	E	A	L	S	E	I	L	R	R	V	G	L	E	K	L	L	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	L	R	G	G	E	E	W	A	M	H	V	W	D	D	V	L	L	K	L	G	T	E	I	M	L	F	R	R	R	A	L	T	R	L	D	E	L	A	R	E	A	N	A	Q	L	G	S	R	K	T	L	A	L	T	L	T	E	S	T	S	P	E	T	Y	A	A	D	L	R	G	R	R	A	E	E	L	A	R
Template Known Secondary structure						T	T		G	G	G	T	T	T	T																																	T	T			S									S	S		T	T	T								T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		461	.	.	.	.	.	.	.	.	470	.	.	.	.											.	.	.	.	.	480	.	.	.	.	.	.	.	.	.										490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.
Query Sequence		D	A	G	L	N	S	W	L	G	E	G	G	R	Q	.	.	.	.	.	.	.	.	.	.	L	S	G	G	E	L	R	R	L	A	I	A	R	A	L	.	.	.	.	.	.	.	.	.	L	H	D	A	P	L	V	L	L	D	E	P	T	E	G	L	D	A	T	T	E	S	Q	I	L	E	L	L	A	E	M	M
Query Conservation																.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.																															.	.
Template Conservation																																																																																.	.
Template Sequence		G	S	T	V	T	G	P	H	R	D	D	L	L	L	T	L	G	D	F	P	A	S	D	Y	A	S	R	G	E	G	R	T	V	A	L	A	L	R	R	A	E	L	E	L	L	R	E	K	F	G	E	D	P	V	L	L	L	D	D	F	T	A	E	L	D	P	H	R	R	Q	Y	L	L	D	L	A	A	S	.	.
Template Known Secondary structure		T	S				S	G	G	G								T	T																																S	S									G	G	G																	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.							.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.
Query Sequence		R	E	K	T	V	L	M	V	T	H	R	L	R	G	L	S	R	.	.	.	.	.	.	F	Q	Q	I	I	V	M	D	N	G	Q	I	I	E	Q	G	T
Query Conservation																			.	.	.	.	.	.
Alig confidence		.																	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	V	P	Q	A	I	V	T	G	T	E	L	A	P	G	A	A	L	T	L	R	A	Q	A	G	R	F	T	P	V	A	D	E	E	M	Q	A	E	G	T
Template Known Secondary structure		.	S	S							S	S			T	T		S							T	T								T	T	T	S		T	T
Template Predicted Secondary structure		.
Template SS confidence
			320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions