Job Description P23886 Confidence 100.00% Date Thu Jan 5 11:40:21 GMT 2012 Rank 14 Aligned Residues 525 % Identity 14% Template c2iw3B_ PDB info PDB header:translation Chain: B: PDB Molecule:elongation factor 3a; PDBTitle: elongation factor 3 in complex with adp Resolution 2.4 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	L	P	Y	L	A	L	Y	K	R	H	K	W	M	L	S	L	G	I	V	L	A	I	V	T	L	L	A	S	I	G	L	L	T	L	S	G	W	F	L	S	A	S	A	V	A	G	V	A	G	L	Y	S	F	N	Y	M	L	P	A	A	G	V	R	G	A	A	I	T	R	T	A	G	R	Y	F	E	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	L	V	P	A	I	C	T	N	A	G	N	K	D	K	E	I	Q	S	V	A	S	E	T	L	I	S	I	V	N	A	V	N	P	V	A	I	K	A	L	L	P	H	L	T	N	A	I	V	E	T	N	K	W	Q	E	K	I	A	I	L	A	A	F	S	A	X	V	D	A	A	K	D	Q	V	A	L	R	X	P
Template Known Secondary structure		T	T								T	T		S	S																		S		G	G	G																																			S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	H	D	A	T	F	R	V	L	Q	H	L	R	I	Y	T	F	S	K	L	L	P	L	S	P	A	G	L	A	R	Y	R	Q	G	E	L	L	N	R	V	V	A	D	V	D	T	L	D	H	L	Y	L	R	V	I	S	P	L	V	G	A	F	V	V	I	M	V	V	T	I	G	L	S	F	L	D	F	T	L
Query Conservation
Alig confidence																																																				.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.
Template Sequence		E	L	I	P	V	L	S	E	T	X	W	D	T	K	K	E	V	K	A	A	A	T	A	A	X	T	K	A	T	E	T	V	D	N	K	D	I	E	R	F	I	P	S	L	I	Q	C	I	A	D	.	.	.	.	.	.	P	T	E	V	P	E	T	V	H	L	L	G	A	T	T	F	V	A	E	V	T	P	A	T
Template Known Secondary structure											T	T		S																G	G	G			S	S	T	T	G	G	G											.	.	.	.	.	.	G	G	G									T	T					S
Template Predicted Secondary structure																																																				.	.	.	.	.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.							.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.				.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.																																												.	.
Query SS confidence																																		.	.	.																																												.	.
Query Sequence		A	F	T	L	G	G	I	M	L	L	T	L	F	L	M	P	P	L	F	Y	R	A	G	K	S	T	G	Q	N	L	T	H	.	.	.	L	R	G	Q	Y	R	Q	Q	L	T	A	W	L	Q	G	Q	A	E	L	T	I	F	G	A	S	D	R	Y	R	T	Q	L	E	N	T	E	I	Q	W	L	E	A	Q	.	.
Query Conservation																																		.	.	.																																												.	.
Alig confidence																																		.	.	.																																												.	.
Template Conservation
Template Sequence		L	S	I	X	V	P	L	L	S	R	G	L	N	E	R	E	T	G	I	K	R	K	S	A	V	I	I	D	N	X	C	K	L	V	E	D	P	Q	V	I	A	P	F	L	G	K	L	L	P	G	L	K	S	N	F	A	T	I	A	D	P	E	A	R	E	V	T	L	R	A	L	K	T	L	R	R	V	G	N	V
Template Known Secondary structure														T	S	S	S																T	T												T	T	T																															T	T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
																			238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	R	Q	S	E	L	T	A	L	S	Q	A	I	M	L	L	I	G	A	L	A	V	I	L	M	L	W	M	A	S	G	G	V	G	G	N	A	Q	P	G	A	L	I	A	L	F	V	F	C	A	L	A	A	F	E	A	L	A	P	V	T	G	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	E	D	D	A	I	P	E	L	S	H	A	G	D	V	S	T	T	L	Q	V	V	N	E	L	L	K	D	E	T	V	A	P	R	F	K	I	V	V	E	Y	I	A	A	I	G	A	D	L	I	D	E	R	I	I	D	Q	Q	A	W	F	T	H	I	T	P	Y	X	T	I	F	L	H	E	K	K	A	K	D	I
Template Known Secondary structure			G	G	G								T	T													T	T	T	S				G	G	G																	T	T			S								T					T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Q	H	L	G	Q	V	I	A	S	A	V	R	I	S	D	L	T	D	Q	K	P	E	V	T	F	P	D	T	Q	T	R	V	A	D	R	V	S	L	T	L	R	D	V	Q	F	T	Y	P	E	Q	S	Q	Q	A	L	K	G	I	S	L	Q	V	N	A	G	E	H	I	A	I	L	G	R	T	G	C	G	K	S
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Sequence		L	D	E	F	R	K	R	A	V	.	.	.	.	.	.	.	.	.	.	.	D	N	I	P	V	G	P	N	F	D	D	E	E	D	E	G	E	D	L	C	N	C	E	F	S	L	A	Y	G	A	.	.	K	I	L	L	N	K	T	Q	L	R	L	K	R	A	R	R	Y	G	I	C	G	P	N	G	C	G	K	S
Template Known Secondary structure											.	.	.	.	.	.	.	.	.	.	.	T	T	S									T	T	S	S														T	T	.	.													T	T								S	T	T	S	S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.																															.	.
Template SS confidence
		403	.	.	.	.	.	.	410	.												.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.			.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.			.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		T	L	L	Q	Q	L	T	R	A	W	D	P	Q	Q	G	E	I	L	L	N	D	S	P	I	A	S	L	N	E	A	A	L	R	Q	T	I	S	V	V	P	Q	R	V	.	.	H	L	F	S	A	T	L	R	D	N	L	L	L	A	S	P	G	S	S	D	E	A	L	S	E	I	L	R	R	V	G	L	E	K	L
Query Conservation																																													.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.														.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Sequence		T	L	X	R	A	I	A	N	G	Q	V	D	G	F	P	T	Q	E	E	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	V	Y	V	E	H	D	I	D	G	T	H	S	D	T	S	V	L	D	F	V	F	E	.	S	G	V	G	T	K	E	A	I	K	D	K	L	I	E	F	G	F	T	D	E
Template Known Secondary structure									T	T		S	T	T				T	T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T								T	T	S	B							T	.	T			S													T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template SS confidence
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.															490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.		.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.
		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	D	A	G	L	N	S	W	L	G	E	G	G	R	Q	L	S	G	G	E	L	R	R	L	A	I	A	R	A	L	L	H	D	A	P	L	V	L	L	D	E	P	T	E	G	L	D	A	T	T	E	S	Q	I	L	E	L	L	A	E	M	M	R	E	K	T	V	L	M	V	T	H	R	L	R	G	L	S	R
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.																																															.	.
Template Conservation										.	.	.	.	.	.	.	.																																															.	.
Template Sequence		X	I	A	X	P	I	S	A	.	.	.	.	.	.	.	.	L	S	G	G	W	K	X	K	L	A	L	A	R	A	V	L	R	N	A	D	I	L	L	L	D	E	P	T	N	H	L	D	T	V	N	V	A	W	L	V	N	Y	L	N	T	C	.	.	G	I	T	S	I	T	I	S	H	D	S	V	F	L	D	N
Template Known Secondary structure					S	B	G	G	G	.	.	.	.	.	.	.	.																	T	T		S						S	T	T	T	T																S	.	.		S							S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.																																															.	.
Template SS confidence
		535	.	.	.	.	540	.	.									.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.			.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.
			539	540	.	.	.	.	.	.	.	.	.	550	.	.		.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.
Predicted Secondary structure		.															.
Query SS confidence		.															.
Query Sequence		.	F	Q	Q	I	I	V	M	D	N	G	Q	I	I	E	.	Q	G	T	H	A	E	L	L	A	R	Q	G	R	Y	Y	Q	F	K	Q
Query Conservation		.															.
Alig confidence		.															.
Template Conservation
Template Sequence		V	C	E	Y	I	I	N	Y	E	G	L	K	L	R	K	Y	K	G	N	F	T	E	F	V	K	K	C	P	A	A	K	A	Y	E	E
Template Known Secondary structure				S							T	T							S										G	G	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		605	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.