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Job DescriptionP23886
Confidence100.00%DateThu Jan 5 11:40:21 GMT 2012
Rank1Aligned Residues567
% Identity24%Templatec2hydB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   1........10.........20.........30.........40.........50........ .60.........70.......
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Query Sequence  MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFN. . . YMLPAAGVRGAAITRTAGR
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Template Sequence  IKRYLQFV. . . KPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIE
Template Known Secondary structure  ...GGGTTTTTTT
SS
TTTTTTT
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   2....... 10.........20.........30.........40.........50.........60.........70........
 
   78.80.........90.........100.........110.........120.........130.........140.........150.......
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Query Sequence  YFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSF
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Template Conservation                   
   
   

            
 
   
  
   
                  
     
  
Template Sequence  FIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFF
Template Known Secondary structure  S
TS
T




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   7980.........90.........100.........110.........120.........130.........140.........150........
 
   158.160.........170.........180.........190.........200.........210.........220.........230.......
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Query Sequence  LDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQ
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Template Sequence  LDVKLTLAALFIFPF. YILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRA
Template Known Secondary structure 
T.TT
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   159160.........170... ......180.........190.........200.........210.........220.........230.......
 
   238.240.........250.........260.........270.........280.........290.........300.........310.......
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Query Sequence  RRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRISDL
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Template Conservation                                                             
            
  

   
Template Sequence  LKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQL
Template Known Secondary structure  TTTSS
TTTT
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   238.240.........250.........260.........270.........280.........290.........300.........310.......
 
   318.320.........330.. .......340.........350.........360.........370.........380.........390......
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Query Sequence  TDQKPEVTFPDTQTR. VADRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQQLTRAWDPQQGE
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Template Conservation                        
    

  
       
   

 
  
    
 
 







   
 
      
 
Template Sequence  IDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ
Template Known Secondary structure  T


SS


TT






S


S
SSS

S
TT

STTSSTTTTTSS

S
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   318.320.........330.........340.........350.........360.........370.........380.........390.......
 
   397..400.........410.........420.........430.........440.........450.........460 .........470....
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Query Sequence  ILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALSEILRRVGLEKLLE. . DAGLNSWLGEGGRQ
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Template Conservation 
      
           
  
 
   
  


 


               
    
   
  
  
  
 
   
  
Template Sequence  ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK
Template Known Secondary structure  TTGGGS
T
SS



SSBGGG
SS

TT
TSTTGGG
B

GGGTT
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   398.400.........410.........420.........430.........440.........450.........460.........470.......
 
   475....480.........490.........500.........510.........520.........530.........540.........550....
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Query Sequence  LSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQG
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Template Sequence  LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG
Template Known Secondary structure  S


SSTTTT

TTTS
SSGGGTTT
STT
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   478.480.........490.........500.........510.........520.........530.........540.........550.......
 
   555....560.........570.
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Query Sequence  THAELLARQGRYYQFKQ
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Template Conservation     

         
  
Template Sequence  THRELIAKQGAYEHLYS
Template Known Secondary structure 
TTST
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   558.560.........570....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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