Job Description P23886 Confidence 96.64% Date Thu Jan 5 11:40:21 GMT 2012 Rank 132 Aligned Residues 123 % Identity 16% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	G	E	H	I	A	I	L	G	R	T	G	C	G	K	S	T	L	L	Q	Q	L	T	R	A	W	D	P	Q	Q	G	E	I	L	L	N	D	S	P	I	A	S	L	N	E	A	A	L	R	Q	T	I	S	V	V	P	Q	R	V	H	L	F	S	A	T	L	R	D	N	L	L	L	A	S	P	G	S	S	D
Query Conservation
Alig confidence																														.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	.	K	R	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	V	G	L	V	A	A	D	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	A	A	Y
Template Known Secondary structure		S	S	S								S	S	S	S	S	S	T	T	T										.	T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				B						S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S		S
Template Predicted Secondary structure																														.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.																			.	.	.	.	130	.	.	.	.	.															.	.	.	.	140
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.		.	.	.	.	.	.	.			510	.	.	.	.	.	.	.	.	.	520
Predicted Secondary structure																																																													.								.	.
Query SS confidence																																																													.								.	.
Query Sequence		E	A	L	S	E	I	L	R	R	V	G	L	E	K	L	L	E	D	A	G	L	N	S	W	L	G	E	G	G	R	Q	L	S	G	G	E	L	R	R	L	A	I	A	R	A	L	L	H	D	A	P	L	V	L	L	D	E	P	T	.	E	G	L	D	A	T	T	.	.	E	S	Q	I	L	E	L	L	A	E	M
Query Conservation																																																													.								.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.																									.								.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	.	.	.	.	.	.	.	.	.	.	.	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L
Template Known Secondary structure											T	T							S	S				T	T	.	.	.	.	.	.	.	.	.	.	.													T	T		S									S			S	S	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.												.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		521	.	.	.	.	.	.	.	.	530
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	E	K	T	V	L	M	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	P	D	D	V	I	L	V	I	D
Template Known Secondary structure				S
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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