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Job DescriptionP23886
Confidence100.00%DateThu Jan 5 11:40:21 GMT 2012
Rank44Aligned Residues217
% Identity26%Templatec1q1bD_
PDB info PDB header:transport proteinChain: D: PDB Molecule:maltose/maltodextrin transport atp-binding protein malk; PDBTitle: crystal structure of e. coli malk in the nucleotide-free form
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   339340.........350.........360.........370.........380.........390.........400.........410........
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Query Sequence  LTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQQLTRAWDPQQGEILLNDSPIASLNEAALRQTISV
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Template Sequence  VQLQNVTKAWGE. . VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA. . ERGVGM
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SGGGSTTTSS


SSTT
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   4.....10..... ....20.........30.........40.........50.........60.........70... ......
 
   419420........ .430.........440.........450.........460.........470.........480.........490.......
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Query Sequence  VPQRVHLFSA. TLRDNLLLASPGSSDEALSEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVL
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Template Sequence  VFQSYALYPHLSVAENMSFGLKLAGAKKEV. . . INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL
Template Known Secondary structure  B
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TTS
TTTTTTSSSSTTTT...TTTTTGGGT
TT
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GGGTTTSSSSTTTT

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   80.........90.........100......... 110.........120.........130.........140.........150......
 
   498.500.........510.........520.. .......530...... ...540.........550.........560..
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Query Sequence  LDEPTEGLDATTESQILELLAEMMR. . EKTVLMVTHRLRGL. SRFQQIIVMDNGQIIEQGTHAELLAR
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Template Sequence  LDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY
Template Known Secondary structure  BSSTTTT

TTTTT

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   157..160.........170.........180.........190.........200.........210.........220....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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