Job Description P0ACL0 Confidence 91.25% Date Thu Jan 5 11:18:24 GMT 2012 Rank 273 Aligned Residues 89 % Identity 15% Template c6paxA_ PDB info PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		K	Q	T	Q	R	H	N	G	I	I	E	L	V	K	Q	Q	G	Y	V	S	T	E	E	L	V	E	H	F	S	V	S	P	Q	T	I	R	R	D	L	N	E	L	A	E	Q	N	L	I	L	.	R	H	H	G	G	A	A	L	P	S	S	S	V	N	T	P	W	H	D	R	K	A	T	Q	T	E	E	K	E	R
Query Conservation																																																			.
Alig confidence															.				.																																.
Template Conservation															.				.
Template Sequence		L	P	D	S	T	R	Q	R	I	V	E	L	A	.	H	S	G	.	A	R	P	C	D	I	S	R	I	L	Q	V	S	N	G	C	V	S	K	I	L	G	R	Y	Y	A	T	G	S	I	R	P	R	A	I	G	G	S	K	P	R	V	A	T	P	E	V	V	S	K	I	A	Q	Y	K	Q	E	C	P	S	I	F
Template Known Secondary structure															.		T	T	.											T																	S			S					S					S	S	S																T	T
Template Predicted Secondary structure															.				.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	R	K	V	A	E	Q	I	P	N	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	W	E	I	R	D	R	L	L	S	E	G
Template Known Secondary structure												T	T
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions