Return to main results Retrieve Phyre Job Id

Job DescriptionP04982
Confidence100.00%DateWed Jan 25 15:20:11 GMT 2012
Rank3Aligned Residues138
% Identity20%Templated2ob5a1
SCOP infoRbsD-like RbsD-like RbsD-like
Resolution1.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1... .....10.........20.........30.. .......40.........50.........60.........70..
Predicted Secondary structure 



..












......






















Query SS confidence 



. .



























. . . . . .







































Query Sequence  MKKG. . TVLNSDISSVISRLGHTDTLVVCDAGLP. . . . . . IPKSTTRIDMALTQGVPSFMQVLGVVTNEMQVEAAIIAEE
Query Conservation 
 
 .. 

 
 

  

 




 





  
......       
 
    
 
    

  
  
  

      
Alig confidence 



..



























......







































Template Conservation   

 
  

 



  

 




 








  
 
        
 
           

  
  
  

      
Template Sequence  XLKNIDPALNADVLHALRAXGHGDTLVISDTNFPSDSVARQTTVGKVLHIDNVSAARAXKAILSVLPLDTPLQPSVGRXE
Template Known Secondary structure 

TTS
TTS


TT

SSS
TTSSS
S

TT

TT

B
TTTS


Template Predicted Secondary structure 





































Template SS confidence 















































































   1........10.........20.........30.........40.........50.........60.........70.........80
 
   73......80.........90.........100.........110.........120.........130........
Predicted Secondary structure 

























Query SS confidence 

































































Query Sequence  IKHHNPQLHETLLTHLEQLQKHQGNTIEIRYTTHEQFKQQTAESQAVIRSGECSPYANIILCAGVT
Query Conservation                                 
 
  

  
  
  

 


   





  


Alig confidence 

































































Template Conservation            
       
         
  


  

  
  
  

 


   





 



Template Sequence  VXGAPDQLEPVQVEVQQEIDAAEGKSAPXYGIERFAFYEKAKQAYCVITTGETRFYGCFLLTKGVI
Template Known Secondary structure  BTTBTT


TS




TSS
S

STT

B


Template Predicted Secondary structure 
































Template SS confidence 

































































   81........90.........100.........110.........120.........130.........140......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions