Job Description P0AD65 Confidence 98.15% Date Thu Jan 5 11:20:07 GMT 2012 Rank 79 Aligned Residues 301 % Identity 14% Template d1rgya_ SCOP info beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like beta-Lactamase/D-ala carboxypeptidase Resolution 1.52

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		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																			.	.																		.
Query SS confidence																			.	.																		.
Query Sequence		L	D	L	K	L	Q	Q	Y	I	E	T	L	L	A	G	S	R	.	.	A	A	V	V	V	T	D	P	R	T	G	G	V	L	A	L	V	.	S	T	P	S	Y	D	P	N	L	F	V	D	G	I	S	S	K	D	Y	S	A	L	L	N	D	P	N	T	P	L	V	N	R	A	T	Q	G	V	Y	P	P	A	S
Query Conservation																			.	.																		.
Alig confidence																			.	.							.											.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	D	I	V	N	R	T	I	T	P	L	M	Q	E	Q	A	I	P	G	M	A	V	A	I	.	I	Y	E	G	K	P	Y	Y	F	T	W	G	K	A	D	I	A	N	N	H	P	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	Q	T	L	F	E	L	G	S
Template Known Secondary structure																		T		S							.			T	T												T	T	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T		B				G	G
Template Predicted Secondary structure																											.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.																							.	.	.	.	60	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.				.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	V	K	P	Y	V	A	V	S	A	L	.	.	.	S	A	G	V	I	T	R	N	T	T	L	F	D	P	G	W	W	Q	L	P	G	S	E	K	R	Y	R	D	W	K	K	W	G	H	G	R	L	N	V	T	R	S	L	E	E	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation													.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.													.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	S	K	T	F	N	G	V	L	G	G	D	A	I	A	R	G	E	I	K	L	S	D	P	V	T	.	.	.	.	.	.	.	.	.	.	.	K	Y	W	P	E	L	T	G	K	Q	W	R	G	I	S	L	L	H	L	A	T	Y	T	A	G	G	L	P	L	Q	I	P	D	D	I	T	D	K	A	A	L	L	R
Template Known Secondary structure		G															T	T	S			T	T	S	B			.	.	.	.	.	.	.	.	.	.	.				T	T				G	G	G	T	T		B						T	T		S	S				S	S			T	T			S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90												.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
																				389	390	.	.	.	.	.	.				.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	F	F	Y	Q	V	A	.	.	.	Y	D	M	G	I	D	R	L	S	E	W	M	G	K	F	G	Y	G	H	Y	T	G	I	D	L	A	E	E	R	S	G	N	M	P	T	R	E	W	K	Q	K	R	F	K	K	P	W	Y	Q	G	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.															.
Template Conservation																																													.
Template Sequence		F	Y	Q	N	W	Q	P	Q	W	T	P	G	A	K	R	L	Y	A	N	S	S	I	G	L	F	G	A	L	A	V	K	P	S	G	M	S	Y	E	E	A	M	T	R	.	R	V	L	Q	P	L	K	L	A	H	T	W	I	T	V	P	Q	S	E	Q	K	N	Y	A	W	G	Y	R	E	G	K	P	V	H	V	S
Template Known Secondary structure									S	S		T	T	S																	T	T	T	T	T	S									.		T	T	T	T	T	T		T	T			S	S			G	G	G	G	G	G	B						T	T
Template Predicted Secondary structure																																													.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.							.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure																																										.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.
Query Sequence		T	I	P	V	G	I	G	Q	G	Y	W	T	A	T	P	I	Q	M	S	K	A	L	M	I	L	I	N	D	G	I	V	K	V	P	H	L	L	M	S	T	.	.	.	.	.	.	A	E	D	G	K	Q	V	P	W	V	Q	P	H	E	P	P	V	G	D	I	H	S	G	Y	W	E	L	A	K	D	G	M	Y	G
Query Conservation																																										.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.
Template Conservation
Template Sequence		P	G	Q	L	D	A	E	A	Y	G	V	K	S	S	V	I	D	M	A	R	W	V	Q	A	N	M	D	A	S	H	V	Q	E	K	T	L	Q	Q	G	I	E	L	A	Q	S	R	Y	W	R	I	G	D	M	Y	Q	G	L	G	W	E	M	L	N	W	P	L	K	A	D	S	I	I	N	G	S	D	S	K	V	A
Template Known Secondary structure				T	T					T																			G	G	G			S											T	S						T	T					S	S						S	S										T	S
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	N	R	P	N	G	T	A	H	K	Y	F	A	S	A	P	Y	K	I	A	A	K	S	G	T	A	Q	V	F	G	L	K	A	N	E	T	Y	N	A	H	K	I	A	E	R	L	R	D	H	K	L	M	T	A	F	A	P	Y	N	N	P	Q	V	A	V	A	M	I	L	E	N	G	G	A	G	P	A	V	G
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Sequence		L	A	A	L	P	A	V	E	V	N	P	P	V	P	A	V	K	A	S	W	V	H	K	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	G	G	F	G	S	Y	V	A	F	V	P	E	K	N	.	.	L	G	I	V	M	L	A	N	K	S	Y	P	N	P	V	R	V
Template Known Secondary structure		T	S															S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S									G	G	G	T	.	.								S	B
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.																					.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.			.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		602	.	.	.	.	.	.	.	610	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	M	R	Q	I	L	D	H	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	A	W	R	I	L	E	K	L
Template Known Secondary structure										T	T
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.	.	.	.	.	360

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions