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Job DescriptionP0AD65
Confidence98.15%DateThu Jan 5 11:20:07 GMT 2012
Rank79Aligned Residues301
% Identity14%Templated1rgya_
SCOP infobeta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like beta-Lactamase/D-ala carboxypeptidase
Resolution1.52

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   254.....260.........270 .........280....... ..290.........300.........310.........320.........330
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Query Sequence  LDLKLQQYIETLLAGSR. . AAVVVTDPRTGGVLALV. STPSYDPNLFVDGISSKDYSALLNDPNTPLVNRATQGVYPPAS
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Template Sequence  IADIVNRTITPLMQEQAIPGMAVAI. IYEGKPYYFTWGKADIANNHPVT. . . . . . . . . . . . . . . . . . . . . . QQTLFELGS
Template Known Secondary structure  T
S.TTTTTT

......................TT
B
GG
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   8.10.........20.........30.. .......40.........50..... ....60....
 
   331........340. ........350.........360.........370.........380........
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Query Sequence  TVKPYVAVSAL. . . SAGVITRNTTLFDPGWWQLPGSEKRYRDWKKWGHGRLNVTRSLEESA. . . . . . . . . . . . . . . . . . .
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Template Sequence  VSKTFNGVLGGDAIARGEIKLSDPVT. . . . . . . . . . . KYWPELTGKQWRGISLLHLATYTAGGLPLQIPDDITDKAALLR
Template Known Secondary structure  GTTS

TTSB...........
TT


GGGTT
BTT
SS


SS

TT

S
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   65....70.........80.........90 .........100.........110.........120.........130...
 
   389390...... ...400.........410.........420.........430.........440.......
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Query Sequence  . . . . . . . . . . . . . . . . . . DTFFYQVA. . . YDMGIDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGD
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Template Sequence  FYQNWQPQWTPGAKRLYANSSIGLFGALAVKPSGMSYEEAMTR. RVLQPLKLAHTWITVPQSEQKNYAWGYREGKPVHVS
Template Known Secondary structure 


SS
TTS


TTTTTS
.TTTTTT
TTSS

GGGGGGB

TT


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   134.....140.........150.........160.........170...... ...180.........190.........200.........210..
 
   448.450.........460.........470.........480....... ..490.........500.........510.........520.
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Query Sequence  TIPVGIGQGYWTATPIQMSKALMILINDGIVKVPHLLMST. . . . . . AEDGKQVPWVQPHEPPVGDIHSGYWELAKDGMYG
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Template Sequence  PGQLDAEAYGVKSSVIDMARWVQANMDASHVQEKTLQQGIELAQSRYWRIGDMYQGLGWEMLNWPLKADSIINGSDSKVA
Template Known Secondary structure 

TTT



GGG

STSTT
SS
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TS
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   213......220.........230.........240.........250.........260.........270.........280.........290..
 
   522.......530.........540.........550.........560.........570.........580.........590.........600.
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Query Sequence  VANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAERLRDHKLMTAFAPYNNPQVAVAMILENGGAGPAVG
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Template Sequence  LAALPAVEVNPPVPAVKASWVHKTG. . . . . . . . . . . . . . . . . . . . STGGFGSYVAFVPEKN. . LGIVMLANKSYPNPVRV
Template Known Secondary structure  TS




SS....................
SS
GGGT..SB


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   293......300.........310....... ..320.........330... ......340.........350
 
   602.......610.
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Query Sequence  TLMRQILDHI
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Template Sequence  EAAWRILEKL
Template Known Secondary structure  TT
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   351........360
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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