Job Description P0AD65 Confidence 100.00% Date Thu Jan 5 11:20:07 GMT 2012 Rank 1 Aligned Residues 485 % Identity 28% Template c3oc2A_ PDB info PDB header:penicillin-binding protein Chain: A: PDB Molecule:penicillin-binding protein 3; PDBTitle: crystal structure of penicillin-binding protein 3 from pseudomonas2 aeruginosa Resolution 1.97 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	R	I	K	L	V	P	I	A	P	S	R	G	I	I	Y	D	R	N	G	I	P	L	A	L	N	R	T	I	Y	Q	I	E	M	M	P	E	K	V	D	N	V	Q	Q	T	L	D	A	L	R	S	V	V	D	L	T	D	D	D	I	A	A	F	R	K	E	R	A	R	S	H	R	F	T	S	I	P	V	K
Query Conservation
Alig confidence																																																																										.	.	.
Template Conservation																																																																										.	.	.
Template Sequence		A	R	S	V	R	H	I	A	I	P	A	H	R	G	L	I	T	D	R	N	G	E	P	L	A	V	S	T	P	V	T	T	L	W	A	N	P	K	E	L	M	T	A	K	E	R	W	P	Q	L	A	A	A	L	G	Q	D	T	K	L	F	A	D	R	I	E	Q	N	A	E	R	E	.	.	.	F	I	Y	L	V
Template Known Secondary structure																				T	T	S																				T	T		G	G	G								T	T												T	T	T	T		S	.	.	.
Template Predicted Secondary structure																																																																										.	.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.				.	.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	L	T	E	V	Q	V	A	R	F	A	V	N	Q	Y	R	F	P	G	V	E	V	K	G	Y	K	R	R	Y	Y	P	Y	G	S	A	L	T	H	V	I	G	Y	V	S	K	I	N	D	K	D	V	E	R	L	N	N	D	G	K	L	A	N	Y	A	A	T	H	D	I	G	K	L	G	I	E	R	Y	Y	E
Query Conservation
Alig confidence													.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	G	L	T	P	E	Q	G	E	G	V	.	.	I	A	L	K	V	P	G	V	Y	S	I	E	E	F	R	R	F	Y	P	A	G	E	V	V	A	H	A	V	G	F	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	D	R	G	R	E	G	I	E	L	A	F	D
Template Known Secondary structure													.	.		T	T			T	T												T	T	G	G	G	G							B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S		B		S						T
Template Predicted Secondary structure													.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.																						170	.	.	.	.	.	.	.	.	.	180	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.								.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure																													.																											.	.	.	.	.	.	.
Query SS confidence																													.																											.	.	.	.	.	.	.
Query Sequence		D	V	L	H	G	Q	T	G	Y	E	E	V	E	V	N	N	R	G	R	V	I	R	Q	L	K	E	V	.	P	P	Q	A	G	H	D	I	Y	L	T	L	D	L	K	L	Q	Q	Y	I	E	T	L	L	A	G	.	.	.	.	.	.	.	S	R	A	A	V	V	V	T	D	P	R	T	G	G	V	L	A	L	V
Query Conservation																													.																											.	.	.	.	.	.	.
Alig confidence																													.																											.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	W	L	A	G	V	P	G	K	R	Q	V	L	K	D	R	R	G	R	V	I	K	D	V	Q	V	T	K	N	A	K	P	G	K	T	L	A	L	S	I	D	L	R	L	Q	Y	L	A	H	R	E	L	R	N	A	L	L	E	N	G	A	K	A	G	S	L	V	I	M	D	V	K	T	G	E	I	L	A	M	T
Template Known Secondary structure							B										T	T							S	S			B			B							B	S																					T											T	T	T		B
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.		.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		S	T	P	S	Y	D	P	N	L	F	V	D	G	I	S	S	K	D	Y	S	A	L	L	N	D	P	N	T	P	L	V	N	R	A	T	Q	G	V	Y	P	P	A	S	T	V	K	P	Y	V	A	V	S	A	L	S	A	G	V	I	T	R	N	T	T	L	F	D	.	P	G	W	W	Q	L	P	G	S	E	K	R
Query Conservation																																																																					.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.																																													.									.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.
Template Sequence		N	Q	P	T	Y	N	P	N	N	R	R	.	.	.	.	.	.	.	.	.	.	.	.	N	L	Q	P	A	A	M	R	N	R	A	M	I	D	V	F	E	P	G	S	T	V	K	P	F	S	M	S	A	A	L	A	S	G	R	W	K	P	S	D	I	V	D	V	Y	P	G	T	L	Q	I	G	R	.	.	Y	T
Template Known Secondary structure				S				T	T			T	.	.	.	.	.	.	.	.	.	.	.	.	T															B	B		G	G	G	G											T	T	S			T	T						T	T	S					T	T	.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.													.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.			.	.
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	D	W	K	K	W	G	H	G	R	L	N	V	T	R	S	L	E	E	S	A	D	T	F	F	Y	Q	V	A	Y	D	M	G	I	D	R	L	S	E	W	M	G	K	F	G	Y	G	H	Y	T	G	I	D	L	A	E	E	R	S	G	N	M	P	T	R	E	W	K	Q	K	R	F	K	K	P	W	Y	Q	G
Query Conservation
Alig confidence							.																																																													.	.	.	.	.	.	.	.
Template Conservation							.																																																													.	.	.	.	.	.	.	.
Template Sequence		I	R	D	V	S	.	R	N	S	R	Q	L	D	L	T	G	I	L	I	K	S	S	N	V	G	I	S	K	I	A	F	D	I	G	A	E	S	I	Y	S	V	M	Q	Q	V	G	L	G	Q	D	T	G	L	G	F	P	G	E	R	V	G	N	L	P	N	H	.	.	.	.	.	.	.	.	R	K	W	P	K	A
Template Known Secondary structure					S		.				S										T	T																								T	T	T	T	S					S		T	T					B					.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure							.																																																													.	.	.	.	.	.	.	.
Template SS confidence
		330	.	.	.	.		.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.									.	.	.	.	.	400
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	I	P	V	G	I	G	Q	G	Y	W	T	A	T	P	I	Q	M	S	K	A	L	M	I	L	I	N	D	G	I	V	K	V	P	H	L	L	M	S	T	A	E	D	G	K	Q	V	P	W	V	Q	P	H	E	P	P	V	G	D	I	H	S	G	Y	W	E	L	A	K	D	G	M	Y	G	V	A	N	R	P
Query Conservation
Alig confidence												.																																				.	.	.	.	.	.	.	.	.	.	.																							.
Template Conservation												.																																				.	.	.	.	.	.	.	.	.	.	.																							.
Template Sequence		E	T	A	T	L	A	Y	G	Y	G	.	L	S	V	T	A	I	Q	L	A	H	A	Y	A	A	L	A	N	D	G	K	S	V	P	L	S	M	T	R	V	D	R	V	P	D	G	.	.	.	.	.	.	.	.	.	.	.	V	Q	V	I	S	P	E	V	A	S	T	V	Q	G	M	L	Q	Q	V	V	E	A	.
Template Known Secondary structure								T	T		S	.		B	B														T	T	T						B	S	B			S	S					.	.	.	.	.	.	.	.	.	.	.				S																		S	.
Template Predicted Secondary structure												.																																				.	.	.	.	.	.	.	.	.	.	.																							.
Template SS confidence
		401	.	.	.	.	.	.	.	.	410		.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.												.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
		527	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	T	A	H	K	Y	F	A	S	A	P	Y	K	I	A	A	K	S	G	T	A	Q	V	F	G	L	K	A	N	E	T	Y	N	A	H	K	I	A	E	R	L	R	D	H	K	L	M	T	A	F	A	P	Y	N	N	P	Q	V	A	V	A	M	I	L	E	N	G	G	A	G	P	A	V	G	T	L	M	R	Q
Query Conservation
Alig confidence		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	Q	G	G	V	F	R	A	Q	V	P	G	Y	H	A	A	G	K	S	G	T	A	R	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Y	R	S	L	F	A	G	F	A	P	A	T	D	P	R	I	A	M	V	V	V	I	D	E	P	F	G	G	L	V	S	A	P	V	F	S	K
Template Known Secondary structure		.	T	T	S		G	G	G			T	T	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T	S																		T
Template Predicted Secondary structure		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490																			.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
		607	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	D	H	I	M	L	G	D	N	N	T	D	L	P	A	E	N
Query Conservation
Alig confidence												.	.	.
Template Conservation												.	.	.
Template Sequence		V	M	A	G	A	L	R	L	M	N	.	.	.	V	P	P	D	N
Template Known Secondary structure										T	T	.	.	.
Template Predicted Secondary structure												.	.	.
Template SS confidence
		543	.	.	.	.	.	.	550	.	.				.	.	.	.	.