Job Description P0AD65 Confidence 96.01% Date Thu Jan 5 11:20:07 GMT 2012 Rank 101 Aligned Residues 270 % Identity 16% Template c3o3vB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase; PDBTitle: crystal structure of clbp peptidase domain Resolution 2.40 Å

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		257	.	.	260	.	.	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence		K	L	Q	Q	Y	I	E	T	L	L	A	G	S	R	.	.	A	A	V	V	V	T	D	P	R	T	G	G	V	L	A	L	V	S	T	P	S	Y	D	P	N	L	F	V	D	G	I	S	S	K	D	Y	S	A	L	L	N	D	P	N	T	P	L	V	N	R	A	T	Q	G	V	Y	P	P	A	S	T	V	K	P
Query Conservation																.	.
Alig confidence																.	.							.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	S	T	L	I	H	Q	R	M	Q	E	A	K	V	P	A	L	S	V	S	V	.	T	I	K	G	V	R	Q	R	F	V	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	D	V	A	S	Q	K	A	N	T	L	D	T	V	Y	E	L	G	S	M	S	K	A
Template Known Secondary structure															T		S							.			T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	T	T					T	T		B				G	G	G	G
Template Predicted Secondary structure																								.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.																						.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		335	.	.	.	.				340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	V	A	V	S	.	.	.	A	L	S	A	G	V	I	T	R	N	T	T	L	F	D	P	G	W	W	Q	L	P	G	S	E	K	R	Y	R	D	W	K	K	W	G	H	G	R	L	N	V	T	R	S	L	E	E	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation							.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.																.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.
Template Sequence		F	T	G	L	V	V	Q	I	L	I	Q	E	G	R	L	R	Q	G	D	D	I	I	T	.	.	.	.	.	.	.	.	Y	L	P	E	M	R	L	N	Y	Q	G	K	P	A	S	L	T	V	A	D	F	L	Y	H	T	S	G	L	P	F	S	T	L	A	R	L	E	N	P	M	P	G	S	A	V	A	Q	Q	L
Template Known Secondary structure													T	T	S			T	T	S	B				.	.	.	.	.	.	.	.			T	T						T	T						B						T	T		S				T								S			S	S							S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.									.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
																	388	.	390	.	.	.	.	.	.	.	.	.							400	.	.	.	.	.	.	.			.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.									.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.									.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	T	F	F	Y	Q	V	A	Y	D	M	.	.	.	.	.	.	G	I	D	R	L	S	E	W	.	.	M	G	K	F	G	Y	G	H	Y	T	G	I	D	L	A	E	E	R	S	G	N	M	P	T	R	E	W	K	Q	K	R	F	K	K	P	W	Y
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.									.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.									.	.							.
Template Conservation																																																			.
Template Sequence		R	N	E	N	L	L	F	A	P	G	A	K	F	S	Y	A	S	A	N	Y	D	V	L	G	A	V	I	E	N	V	T	G	K	T	F	T	E	V	I	A	E	R	L	T	Q	P	L	G	M	.	S	A	T	V	A	V	K	G	D	E	I	I	V	N	K	A	S	G	Y	K	L	G	F	G	K	P	V	L	F	H
Template Known Secondary structure		T	T				S	S		T	T	S						T	T														S	S										T					T		.	S	S						S	S				T	T	B				B			S	S	S			B
Template Predicted Secondary structure																																																			.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	D	T	I	P	V	G	I	G	Q	G	Y	W	T	A	T	P	I	Q	M	S	K	A	L	M	I	L	I	N	D	G	I	V	K	V	P	H	L	L	M	S	T	A	E	D	G	K	Q	V	P	W	V	Q	P	H	E	P	P	V	G	D	I	H	S	G	Y	W	E	L	A	K	D	G	M	Y	G	V	A	N
Query Conservation
Alig confidence														.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	P	L	A	R	N	H	V	P	A	A	Y	.	I	H	S	T	L	P	D	M	E	I	W	I	D	A	W	L	H	R	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	P	A	T	L	R	E	A	M	S	N	S	W	R	G	N	S	D
Template Known Secondary structure		S				S	T	T					T	.																	T	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S												T					S
Template Predicted Secondary structure														.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.																														.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		525	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.								.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.
Query Sequence		R	P	N	G	T	A	H	K	Y	F	A	S	A	P	Y	K	I	.	.	.	.	.	.	.	A	A	K	S	G	T	A	Q	V	F	G	L	K	A	N	E	T	Y	N	A	H	K	I	A	E	R	L	R	D	H	K	L	M	T	A	F	A	P	Y	N	N	P	Q	V	A	V	A	M	I	L	E	N	G	G	A	G
Query Conservation																			.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.									.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.									.	.
Template Sequence		V	P	L	A	A	D	N	R	I	L	Y	A	S	G	W	F	I	D	Q	N	Q	G	P	Y	I	S	H	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	N	P	N	F	S	S	C	I	A	L	R	P	D	Q	Q	.	.	I	G	I	V	A	L	A	N	.	.	M	N	S
Template Known Secondary structure		S				S	S							S	S						T	T	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S									G	G	G	T	.	.								S	.	.	B
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.									.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.																					330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.			.	.	.	.	350	.	.	.			.	.	.
		598	.	600	.	.	.	.	.	.	.	.	.	610	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	V	G	T	L	M	R	Q	I	L	D	H	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	L	I	L	Q	L	C	A	D	I	D	N	Y	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions