Return to main results Retrieve Phyre Job Id

Job DescriptionP0AD65
Confidence100.00%DateThu Jan 5 11:20:07 GMT 2012
Rank5Aligned Residues505
% Identity26%Templatec2wadB_
PDB info PDB header:peptide binding proteinChain: B: PDB Molecule:penicillin-binding protein 2b; PDBTitle: penicillin-binding protein 2b (pbp-2b) from streptococcus2 pneumoniae (strain 5204)
Resolution2.18 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   61........70.........80.........90..... ....100.........110........
Predicted Secondary structure 









...




...................
Query SS confidence 


































. . .






















. . . . . . . . . . . . . . . . . . .
Query Sequence  LVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKV. . . DNVQQTLDALRSVVDLTDDDIAA. . . . . . . . . . . . . . . . . . .
Query Conservation         

 
 



  

       
   
   ...         

  
      
  ...................
Alig confidence 


































...






















...................
Template Conservation   
   
 

 
 



  

 
     
               
   
                                
Template Sequence  KVTTSSARGEIYDASGKPLVENTLKQVVSFTRSNKMTATDLKEIAKKLLTYVSISSPNLTERQLADYYLADPEIYKKTVE
Template Known Secondary structure 








TTS
BS

TT

TT








TSS
Template Predicted Secondary structure 






















Template SS confidence 















































































   53......60.........70.........80.........90.........100.........110.........120.........130..
 
   119120.........130.........140.........150.........160.....
Predicted Secondary structure  .................................













Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .














































Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FRKERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKGYKRRY
Query Conservation  .................................               
                    

       
 
Alig confidence  .................................














































Template Conservation                                                       
               

       
 
Template Sequence  ALPSESELYNNAVDSVPTSQLNYTEDEKKEIYLFSQLNAVGNFATGTIATDPLNDSQVAVIASISKEMPGISISTSWDRK
Template Known Secondary structure  SS



STSS
S




TTTS
TT


S


TTGGGSTT
Template Predicted Secondary structure 






















Template SS confidence 















































































   133......140.........150.........160.........170.........180.........190.........200.........210..
 
   166...170.........180.........190.........200.........210.........220.........230.........240.....
Predicted Secondary structure 


















































Query SS confidence 















































































Query Sequence  YPYGSALTHVIGYVSKINDKDVERLNNDGKLANYAATHDIGKLGIERYYEDVLHGQTGYEEVEVNNRGRVIRQLKEVPPQ
Query Conservation 

    

 




                   
      
  


  

  
 
  
      
  
  
         
Alig confidence 






.







































































Template Conservation 
     
. 


 
                       
 

  


   
  
 
  
      
               
Template Sequence  ILETSLS. SIVGSVSSEKAGLPAEEAESYLKKGYSLNDRVGTSYLEKQYEEVLQGKRPVKEIHLDKHGDMESVENIEEGS
Template Known Secondary structure 
SSTT.

B

TTT
S
GGGT

SS


B
STS
B


SSS


B
Template Predicted Secondary structure 



.




































Template SS confidence 















































































   225....230. ........240.........250.........260.........270.........280.........290.........300...
 
   246...250.........260........ .270.........280.........290.........300.........310.
Predicted Secondary structure 




..............



















Query SS confidence 






















. . . . . . . . . . . . . .










































Query Sequence  AGHDIYLTLDLKLQQYIETLLAG. . . . . . . . . . . . . . SRAAVVVTDPRTGGVLALVSTPSYDPNLFVDGISSKDYSALLN
Query Conservation   
  
 



  

   
  
  ..............  

 



  

 





 
 



             
  
Alig confidence 






















..............


























................
Template Conservation   
  
 



  

   
  
                   
 

 
  

 


 
        ................
Template Sequence  KGKNIKLTIDLAFQDSVDALLKSYFNSELGNGGAKYSEGVYAVALNPQTGAVLSMSGLKHDLKT. . . . . . . . . . . . . . . .
Template Known Secondary structure 


S

STTTT


TTT
B
TTT................
Template Predicted Secondary structure 
























................
Template SS confidence 















































































   304.....310.........320.........330.........340.........350.........360.......
 
   312.......320.........330.........340.........350.........360.........370.........380.........390.
Predicted Secondary structure 








































Query SS confidence 















































































Query Sequence  DPNTPLVNRATQGVYPPASTVKPYVAVSALSAGVITRNTTLFDPGWWQLPGSEKRYRDWKKWGHGRLNVTRSLEESADTF
Query Conservation         


    
 





  
  



 
           
     
             
 


  

  
 
  
Alig confidence 















































































Template Conservation           
      






    


  
                               
 

   

  
 
  
Template Sequence  GELTPDSLGTVTNVFVPGSVVKAATISSGWENGVLSGNQTLTDQPIVFQGSAPIYSWYKLAYGSFPITAVEALEYSSNAY
Template Known Secondary structure 


TT

B

GGGGTTS

SS



B
BTTS

B

TTTTTT
S
T
Template Predicted Secondary structure 



































Template SS confidence 















































































   368.370.........380.........390.........400.........410.........420.........430.........440.......
 
   392.......400 .........410.........420.........430.........440.........450...
Predicted Secondary structure 

..................





























Query SS confidence 








. . . . . . . . . . . . . . . . . .




















































Query Sequence  FYQVAYDMG. . . . . . . . . . . . . . . . . . IDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGI
Query Conservation     
   

..................           


  





 
  
 

                     

Alig confidence 








..................





























..........












Template Conservation     
   

                             
    

  
  
  
   ..........             
Template Sequence  VVQTALGIMGQTYQPNMFVGTSNLESAMGKLRSTFGEYGLGSATGIDLPDESTGLVP. . . . . . . . . . KEYNFANFITNAF
Template Known Secondary structure  TT



TTB



TTTTTTTS



SSS




B

..........SS

TT
Template Predicted Secondary structure 





































..........




Template SS confidence 















































































   448.450.........460.........470.........480.........490.........500.... .....510.......
 
   454.....460.........470.........480.........490. ........500.........510.........520.....
Predicted Secondary structure 















......












..
Query SS confidence 





































. . . . . .

































. .
Query Sequence  GQGYWTATPIQMSKALMILINDGIVKVPHLLMSTAEDG. . . . . . KQVPWVQPHEPPVGDIHSGYWELAKDGMYGVANR. .
Query Conservation 


   






   
 


 
    
 

  
    ......
               
   
  
   
  

  ..
Alig confidence 


.

































......

































..
Template Conservation 

 .  






 
 
 


 
    
  
  
 
  
                     
   
  
   
  

    
Template Sequence  GQF. DNYTPMQLAQYVATIANNGVRLAPHIVEGIYDNNDKGGLGELIQAIDTKEINKVNISESDMAILHQGFYQVSHGTS
Template Known Secondary structure  TSS.SBB
TTT

BS
TTSS




SS


S
Template Predicted Secondary structure 


.





































Template SS confidence 















































































   518.520 .........530.........540.........550.........560.........570.........580.........590......
 
   526...530.........540.........550.........560.........570.........580.........590.... .....600...
Predicted Secondary structure 








































..


Query SS confidence 




































































. .








Query Sequence  PNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAERLRDHKLMTAFAPYNNPQVAVAMILENG. . GAGPAVGTL
Query Conservation    

           








                       

 
  
   
   
 
 
   ..  
  



Alig confidence 






















.......................






















..








Template Conservation    

           







....................... 




 
   
   
 
 
          
  
Template Sequence  PLTTGRAFSDGATVSISGKTGTN. . . . . . . . . . . . . . . . . . . . . . . TNAVAYAPTENPQIAVAVVFPHNTNLTKNVGPAI
Template Known Secondary structure  TT


GGGTTT
SS




.......................

STTS


TT


SS


Template Predicted Secondary structure 













.......................













Template SS confidence 















































































   597..600.........610......... 620.........630.........640.........650...
 
   604.....610......
Predicted Secondary structure 


Query SS confidence 












Query Sequence  MRQILDHIMLGDN
Query Conservation     
         
Alig confidence 












Template Conservation     
   
     
Template Sequence  ARDIINLYNQHHP
Template Known Secondary structure  S
Template Predicted Secondary structure 

Template SS confidence 












   666...670........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions