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Job DescriptionP0AD65
Confidence100.00%DateThu Jan 5 11:20:07 GMT 2012
Rank20Aligned Residues309
% Identity21%Templatec2jciA_
PDB info PDB header:drug-binding proteinChain: A: PDB Molecule:penicillin-binding protein 1b; PDBTitle: structural insights into the catalytic mechanism and the2 role of streptococcus pneumoniae pbp1b
Resolution2.5 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   246...250.........260........ .270.........280.........290.........300.........310....
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Query Sequence  AGHDIYLTLDLKLQQYIETLLAG. . . . . . . . . . . SRAAVVVTDPRTGGVLALVSTPSYDPNLFVDGISSKDYSALLNDPN
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Template Sequence  GGYKITTTIDQKIHSAMQSAVADYGYLLDDGTGRVEVGNVLMDNQTGAILGFVGGRNYQEN. . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S

S

GGGG

SSS

TTT
B

S
TTT
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   386...390.........400.........410.........420.........430.........440......
 
   315....320.........330...... ...340.........350.........360.........370.........380.........390...
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Query Sequence  TPLVNRATQGVYPPASTVKPYV. AVSALSAGVITRNTTLFDPGWWQLPGSEKRYRDWKKWGHGRLNVTRSLEESADTFFY
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Template Sequence  . . QNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILSNYPTNFANG. . NPIMYANSKGTGMMTLGEALNYSWNIPAY
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TTTT

B

GGGGTTTS

TT

S

B
TTS..
B

BTTB


ST
S
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   447..450.........460.........470.........480.........490... ......500.........510.........520..
 
   394.....400.. .......410.........420.........430.........440.........450.........460.........470.
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Query Sequence  QVAYDMGID. . RLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALMI
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Template Sequence  WTYRMLRENGVDVKGYMEKMGYEIPEYGIE. . . . . . . . . . . . . . . . . . . . . . . . . . . . SLPMGGG. IEVTVAQHTNGYQT
Template Known Secondary structure  TT

TT


S



T............................TGGGTTT.

B
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   523......530.........540.........550.. ....... 560.........570...
 
   472.......480.........490.........500.........510.........520.........530.... .....540.....
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Query Sequence  LINDGIVKVPHLLMSTAEDGKQVPWVQPHEPPVGDIHSGYWELAKDGMYGVANRPNGTAHKYF. . . . . . ASAPYKIAAKS
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Template Sequence  LANNGVYHQKHVISKIEAADGRVVYE. YQDKPVQVYSKATATIMQGLLREVLSSRVTTTFKSNLTSLNPTLANADWIGKT
Template Known Secondary structure  TTT


BS
TTS
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S
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TS

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   574.....580.........590......... 600.........610.........620.........630.........640.........650..
 
   546...550.........560.........570.........580.........590.... .....600.........610.......
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Query Sequence  GTAQVFGLKANETYNAHKIAERLRDHKLMTAFAPYNNPQVAVAMILENG. . . . . . . . GAGPAVGTLMRQILDHIMLGDNN
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Template Sequence  GTT. . . . . . . . . . . . . . . . . . NQDENMWLMLST. . . . PRLTLGGWIGHDDNHSLSQQAGYSNNSNYMAHLVNAIQQASPS
Template Known Secondary structure 
..................GGG

....SS
TT




TTTTTTSTT
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   653.. ....660....... ..670.........680.........690.........700.........710
 
   618.620.........
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Query Sequence  TDLPAENPAVAA
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Template Sequence  IWGNERFALDPS
Template Known Secondary structure  SS







TT
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   711........720..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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