Job Description P0AD65 Confidence 100.00% Date Thu Jan 5 11:20:07 GMT 2012 Rank 20 Aligned Residues 309 % Identity 21% Template c2jciA_ PDB info PDB header:drug-binding protein Chain: A: PDB Molecule:penicillin-binding protein 1b; PDBTitle: structural insights into the catalytic mechanism and the2 role of streptococcus pneumoniae pbp1b Resolution 2.5 Å

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		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.												.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	H	D	I	Y	L	T	L	D	L	K	L	Q	Q	Y	I	E	T	L	L	A	G	.	.	.	.	.	.	.	.	.	.	.	S	R	A	A	V	V	V	T	D	P	R	T	G	G	V	L	A	L	V	S	T	P	S	Y	D	P	N	L	F	V	D	G	I	S	S	K	D	Y	S	A	L	L	N	D	P	N
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	G	Y	K	I	T	T	T	I	D	Q	K	I	H	S	A	M	Q	S	A	V	A	D	Y	G	Y	L	L	D	D	G	T	G	R	V	E	V	G	N	V	L	M	D	N	Q	T	G	A	I	L	G	F	V	G	G	R	N	Y	Q	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S							S																	G	G	G	G			S	S	S											T	T	T		B								S		T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		T	P	L	V	N	R	A	T	Q	G	V	Y	P	P	A	S	T	V	K	P	Y	V	.	A	V	S	A	L	S	A	G	V	I	T	R	N	T	T	L	F	D	P	G	W	W	Q	L	P	G	S	E	K	R	Y	R	D	W	K	K	W	G	H	G	R	L	N	V	T	R	S	L	E	E	S	A	D	T	F	F	Y
Query Conservation																								.
Alig confidence		.	.																					.																											.	.
Template Conservation		.	.																																																.	.
Template Sequence		.	.	Q	N	N	H	A	F	D	T	K	R	S	P	A	S	T	T	K	P	L	L	A	Y	G	I	A	I	D	Q	G	L	M	G	S	E	T	I	L	S	N	Y	P	T	N	F	A	N	G	.	.	N	P	I	M	Y	A	N	S	K	G	T	G	M	M	T	L	G	E	A	L	N	Y	S	W	N	I	P	A	Y
Template Known Secondary structure		.	.				T	T	T	T			B			G	G	G	G					T							T	T	S			T	T						S			B		T	T	S	.	.		B			B	T	T	B				S											T		S
Template Predicted Secondary structure		.	.																																																.	.
Template SS confidence
				447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.			.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.
		394	.	.	.	.	.	400	.	.			.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		Q	V	A	Y	D	M	G	I	D	.	.	R	L	S	E	W	M	G	K	F	G	Y	G	H	Y	T	G	I	D	L	A	E	E	R	S	G	N	M	P	T	R	E	W	K	Q	K	R	F	K	K	P	W	Y	Q	G	D	T	I	P	V	G	I	G	Q	G	Y	W	T	A	T	P	I	Q	M	S	K	A	L	M	I
Query Conservation											.	.
Alig confidence											.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template Sequence		W	T	Y	R	M	L	R	E	N	G	V	D	V	K	G	Y	M	E	K	M	G	Y	E	I	P	E	Y	G	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	P	M	G	G	G	.	I	E	V	T	V	A	Q	H	T	N	G	Y	Q	T
Template Known Secondary structure										T	T										T	T				S					T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	G	G	T	T	T	.			B
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template SS confidence
		523	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.																													.	.	.	.	.	.	.		560	.	.	.	.	.	.	.	.	.	570	.	.	.
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.							.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.
Query Sequence		L	I	N	D	G	I	V	K	V	P	H	L	L	M	S	T	A	E	D	G	K	Q	V	P	W	V	Q	P	H	E	P	P	V	G	D	I	H	S	G	Y	W	E	L	A	K	D	G	M	Y	G	V	A	N	R	P	N	G	T	A	H	K	Y	F	.	.	.	.	.	.	A	S	A	P	Y	K	I	A	A	K	S
Query Conservation																																																																	.	.	.	.	.	.
Alig confidence																												.																																					.	.	.	.	.	.
Template Conservation																												.
Template Sequence		L	A	N	N	G	V	Y	H	Q	K	H	V	I	S	K	I	E	A	A	D	G	R	V	V	Y	E	.	Y	Q	D	K	P	V	Q	V	Y	S	K	A	T	A	T	I	M	Q	G	L	L	R	E	V	L	S	S	R	V	T	T	T	F	K	S	N	L	T	S	L	N	P	T	L	A	N	A	D	W	I	G	K	T
Template Known Secondary structure				T	T	T						B	S							T	T	S						.									S																		T	T	S	S																T	S
Template Predicted Secondary structure																												.
Template SS confidence
		574	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.
		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.									.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.
Query Sequence		G	T	A	Q	V	F	G	L	K	A	N	E	T	Y	N	A	H	K	I	A	E	R	L	R	D	H	K	L	M	T	A	F	A	P	Y	N	N	P	Q	V	A	V	A	M	I	L	E	N	G	.	.	.	.	.	.	.	.	G	A	G	P	A	V	G	T	L	M	R	Q	I	L	D	H	I	M	L	G	D	N	N
Query Conservation																																																			.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.													.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Sequence		G	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	Q	D	E	N	M	W	L	M	L	S	T	.	.	.	.	P	R	L	T	L	G	G	W	I	G	H	D	D	N	H	S	L	S	Q	Q	A	G	Y	S	N	N	S	N	Y	M	A	H	L	V	N	A	I	Q	Q	A	S	P	S
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G										.	.	.	.	S	S										T	T						T	T	T	T	T	T																	S	T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template SS confidence
		653	.	.																			.	.	.	.	660	.	.	.	.	.	.	.					.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710
		618	.	620	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	L	P	A	E	N	P	A	V	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	W	G	N	E	R	F	A	L	D	P	S
Template Known Secondary structure		S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		711	.	.	.	.	.	.	.	.	720	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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