Job Description P0AD65 Confidence 99.25% Date Thu Jan 5 11:20:07 GMT 2012 Rank 67 Aligned Residues 228 % Identity 19% Template c2bcfA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:probable d-alanyl-d-alanine carboxypeptidase PDBTitle: crystal structure of a evolved putative penicillin-binding2 protein homolog, rv2911, from mycobacterium tuberculosis. Resolution 2.30 Å

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		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	V	V	T	D	P	R	T	G	G	V	L	A	L	V	S	T	P	S	Y	D	P	N	L	F	V	D	G	I	S	S	K	D	Y	S	A	L	L	N	D	P	N	T	P	L	V	N	R	A	T	Q	G	V	Y	P	P	A	S	T	V	K	P	Y	V	A	V	S	A	L	S	A	G	V	I	T	R	N	T	T
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Sequence		T	W	I	V	A	D	L	D	S	G	Q	V	L	A	G	R	D	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	V	A	H	P	P	A	S	T	I	K	V	L	L	A	L	V	A	L	D	E	.	.	L	D	L	N	S	T
Template Known Secondary structure								T	T	T								S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T			B			G	G	G													.	.			T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.																																		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.			.	.	.	.	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.					.	.	.	.	390	.	.	.	.	.	.	.	.	.	400						.	.	.	.	.	.	.	.	.	410	.	.						.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.																.	.	.	.	.													.	.	.	.	.
Query SS confidence																																				.	.	.	.																.	.	.	.	.													.	.	.	.	.
Query Sequence		L	F	D	P	G	W	W	Q	L	P	G	S	E	K	R	Y	R	D	W	K	K	W	G	H	G	R	L	N	V	T	R	S	L	E	.	.	.	.	E	S	A	D	T	F	F	Y	Q	V	A	Y	D	M	G	.	.	.	.	.	I	D	R	L	S	E	W	M	G	K	F	G	.	.	.	.	.	Y	G	H	Y	T
Query Conservation																																				.	.	.	.																.	.	.	.	.													.	.	.	.	.
Alig confidence																	.	.	.	.																.	.	.	.																.	.	.	.	.													.	.	.	.	.
Template Conservation																	.	.	.	.
Template Sequence		V	V	A	D	V	A	D	T	Q	A	E	C	N	C	V	.	.	.	.	G	V	K	P	G	R	S	Y	T	V	R	Q	L	L	D	G	L	L	L	V	S	G	N	D	A	A	N	T	L	A	H	X	L	G	G	Q	D	V	T	V	A	K	X	N	A	K	A	A	T	L	G	A	T	S	T	H	A	T	T	P	S
Template Known Secondary structure						T	G	G	G			S	S				.	.	.	.				T	T															S													T	T																	T		T	T		B		S	S	S	S
Template Predicted Secondary structure																	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.					.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	D	L	A	E	E	R	S	G	N	M	P	T	R	E	W	K	Q	K	R	F	K	K	P	W	Y	Q	G	D	T	I	P	V	G	I	G	Q	G	Y	W	T	A	T	P	I	Q	M	S	K	A	L	M	I	L	I	N	D	G	I	V	K	V	P	H	L	L	M	S	T	A	E	D	G	K	Q	V	P	W	V
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	L	D	G	P	G	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	S	T	A	H	D	L	V	V	I	F	R	A	A	X	A	N	P	V	F	A	Q	I	I	A	E	P	S	A	X	F	P	S	D	E	Q	L	I	V
Template Known Secondary structure		S	S		B	T	T	B	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		B	B															S										S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.																																	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		498	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	H	E	P	P	V	G	D	I	H	S	G	Y	W	E	L	A	K	D	G	M	Y	G	V	A	N	R	P	N	G	T	A	H	K	Y	F	A	S	A	P	Y	K	I	A	A	K	S	G	T	A	Q	V	F	G	L	K	A	N	E	T	Y	N	A	H	K	I	A	E	R	L	R	D	H	K	L	M	T	A	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	Q	D	E	L	L	Q	R	Y	P	G	A	I	G	G	K	T	G	Y	T	N	A	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	T	F	V	G	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T					S	T	T										T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																	215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.																				.	240	.	.	.	.
		578	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.		.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		A	P	Y	N	N	P	Q	V	A	V	A	M	I	L	E	N	G	G	.	A	G	P	A	V	G	T	L	M	R	Q	I	L	D	H	I	M	L	G	D	N	N	T	D	L
Query Conservation																				.
Alig confidence																				.
Template Conservation
Template Sequence		A	A	R	G	G	R	R	L	V	I	A	X	X	Y	G	L	V	K	E	G	G	P	T	Y	W	D	Q	A	A	T	L	F	D	W	G	F	A	L	N	P	Q	A	S	V
Template Known Secondary structure					T	T														T	T																		S		T	T			S
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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