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Job DescriptionP0AD65
Confidence97.77%DateThu Jan 5 11:20:07 GMT 2012
Rank87Aligned Residues298
% Identity15%Templatec1zkjA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:extended-spectrum beta-lactamase; PDBTitle: structural basis for the extended substrate spectrum of cmy-2 10, a plasmid-encoded class c beta-lactamase
Resolution1.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   253......260.........270. ........280....... ..290.........300.........310.........320.........330
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Query Sequence  TLDLKLQQYIETLLAGSRA. AVVVTDPRTGGVLALV. STPSYDPNLFVDGISSKDYSALLNDPNTPLVNRATQGVYPPAS
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Template Sequence  PLRPVVDASIQPLLKEHRIPGMAVAVLKDGKAHYFNYGVANRESGAGVS. . . . . . . . . . . . . . . . . . . . . . EQTLFEIGS
Template Known Secondary structure  TTTT
STTBS
TTT

B

......................TT
B
GG
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   8.10.........20.........30.........40.........50...... ...60.....
 
   331........340.. .......350.........360.........370.........380........
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Query Sequence  TVKPYVAVSALS. . . AGVITRNTTLFDPGWWQLPGSEKRYRDWKKWGHGRLNVTRSLEESA. . . . . . . . . . . . . . . . . . .
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Template Sequence  VSKTLTATLGAYAVVKGAMQLDDKAS. . . . . . . . . . . RHAPWLKGSAFDSITMGELATYSAGGLPLQFPEEVDSSEKMRA
Template Known Secondary structure  GTTS

TTSBGG...........GG
GGGTTSGGGSSBTT
SS


SS

TT

S
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   66...70.........80.........90. ........100.........110.........120.........130....
 
   389390...... ...400.........410 .........420.........430.........440..
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Query Sequence  . . . . . . . . . . . . . . . . . . DTFFYQVA. . . YDMGIDRLSEWMGK. . . . . FGYGHYTGIDLAEERSGNMPTREWKQKRFKKP
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Template Sequence  YYRQWAPVYSPGSHRQYSNPSIGLFGHLAASSLKQPFAPLMEQTLLPGLGMHH. TYVNVPKQAMASYAYGYSKEDKPIRV
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SS
TTT


TTS
TTT
SS.
BSS

GGGGGGB


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   135....140.........150.........160.........170.........180....... ..190.........200.........210...
 
   443......450.........460.........470.........480.........490.........500.........510.........520..
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Query Sequence  WYQGDTIPVGIGQGYWTATPIQMSKALMILINDGIVKVPHLLMSTAEDGKQVPWVQPHEPPVGDIHSGYWELAKDGMYGV
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Template Sequence  NPGM. . . . LADEAYGIKTSSADLLRFVKANIGGVDDKALQQAISLTHQGHYSVGGMTQGLGWESYAYPVTEQTLLAGNSA
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T....T


TTT

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   214... ..220.........230.........240.........250.........260.........270.........280.........
 
   523......530.........540.........550.........560.........570.........580.........590.........600..
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Query Sequence  ANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAERLRDHKLMTAFAPYNNPQVAVAMILENGGAGPAVGT
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Template Sequence  KVI. . LEANPTAAPREQVLFNKTGST. . . . . . . . . . . . . . . . . . . . NGFGAYVAFVPARG. . IGIVMLANRNYPIEARIK
Template Known Secondary structure  ..S

B




....................TTGGGT..SB


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   290.. .......300.........310... ......320....... ..330.........340.....
 
   603......610..
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Query Sequence  LMRQILDHIM
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Template Sequence  AAHAILAQLA
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   349350........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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