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Job DescriptionP0AD65
Confidence98.81%DateThu Jan 5 11:20:07 GMT 2012
Rank71Aligned Residues201
% Identity21%Templatec1z6fA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:penicillin-binding protein 5; PDBTitle: crystal structure of penicillin-binding protein 5 from e. coli in2 complex with a boronic acid inhibitor
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   272.......280.........290.........300.........310.........320.........330......... 340........
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Query Sequence  AVVVTDPRTGGVLALVSTPSYDPNLFVDGISSKDYSALLNDPNTPLVNRATQGVYPPASTVKPYVAVS. . . ALSAGVITR
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Template Sequence  SYILIDYNSGKVLAEQNA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DVRRDPASLTKMMTSYVIGQAMKAGKFKE
Template Known Secondary structure  TTT

ST.................................T

B

GGGTTS

T
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   1920.........30...... ...40.........50.........60.....
 
   349350.........360.........370.. .......380.. .......390.........400 .........410.....
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Query Sequence  NTTLFDPGWWQLPGSEKRYRDWKK. . WGHGRLNVTR. . . . SLEESADTFFYQVAYDMG. . . . . . IDRLSEWMGKFGYGH.
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Template Sequence  TDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNT
Template Known Secondary structure  T


GGG
GGG
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TT
TT

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   66...70.........80.........90.........100.........110.........120.........130.........140.....
 
   416...420.........430.........440.........450.........460.........470..... ....480.........490
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Query Sequence  . . . . YTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMSKALMILIND. GIVKVPHLLMSTAED
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Template Sequence  HFQTVHGLDADG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QYSSARDMALIGQALIRDVPNEYSIYKEKEFTFN
Template Known Secondary structure  B

SSS



TT..................................
BB

GGGG

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   146...150....... ..160.........170.........180.........190.
 
   491........500.........510.........520.........530.........540.........550.........560.........570
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Query Sequence  GKQVPWVQPHEPPVGDIHSGYWELAKDGMYGVANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAERLRD
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Template Sequence  GIRQLNRNGLLWD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NSLNVDGIKTGHTDKAG. . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T
S
GGGG
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   192.......200.... .....210.........220.
 
   571........580.........590
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Query Sequence  HKLMTAFAPYNNPQVAVAMI
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Template Sequence  . YNLVASATEGQMRLISAVM
Template Known Secondary structure  .TT
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   222.......230.........240
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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