Job Description P0AD65 Confidence 100.00% Date Thu Jan 5 11:20:07 GMT 2012 Rank 3 Aligned Residues 521 % Identity 19% Template c1pmdA_ PDB info PDB header:peptidoglycan synthesis Chain: A: PDB Molecule:peptidoglycan synthesis multifunctional enzyme; PDBTitle: penicillin-binding protein 2x (pbp-2x) Resolution 3.50 Å

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		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.														.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Query Sequence		R	G	I	I	Y	D	R	N	G	I	P	L	A	L	N	R	T	I	Y	Q	I	E	M	M	P	E	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	V	Q	Q	T	L	D	A	L	R	S	V	V	D	L	T	D	D	D	I	A	A	F	R	K	E	R	A	.	R	S	H	R	F	T	S	I	P
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation
Template Sequence		R	G	T	I	Y	D	R	N	G	V	P	I	A	E	D	A	T	S	Y	N	V	Y	A	V	I	D	E	N	Y	K	S	A	T	G	K	I	L	Y	V	E	K	T	Q	F	N	K	V	A	E	V	F	H	K	Y	L	D	M	E	E	S	Y	V	R	E	Q	L	S	Q	P	N	L	K	Q	V	S	F	G	A	K	G
Template Known Secondary structure								T	T	S					B											B		S	S				T	T	T			S	S			S	T	T	T								T	T	T	T												S	S			S	B						S	S	S
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	T	N	L	T	E	V	Q	V	A	R	F	A	V	N	Q	Y	R	F	P	G	V	E	V	K	G	Y	K	R	R	Y	Y	P	Y	G	S	A	L	T	H	V	I	G	Y	V	S	K	I	N	D	K	D	V	E	R	L	N	N	D	G	K	L	A	N	Y	A	A	T	H	D	I	G	K	L	G	I	E	R	Y
Query Conservation
Alig confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	G	I	T	Y	A	N	M	M	S	I	K	K	E	L	E	A	A	E	V	K	G	I	D	F	T	T	S	P	N	R	S	Y	P	N	G	Q	F	A	S	S	F	I	G	L	A	Q	L	H	E	N	E	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	S	K	S	L	L	G	T	S	G	M	E	S	S
Template Known Secondary structure		S	S	B		T	T	T	T	T	T					S	S	T	T	S													B		S	S	S	S	S	S	T	T	T	S					B				S	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S			B			T	T	S	G	G	G	S
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.														.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.								.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																									.	.																																	.	.	.	.	.	.	.
Query SS confidence																									.	.																																	.	.	.	.	.	.	.
Query Sequence		Y	E	D	V	L	H	G	Q	T	G	Y	E	E	V	E	V	N	N	R	G	R	V	I	.	.	R	Q	L	K	E	V	P	P	Q	A	G	H	D	I	Y	L	T	L	D	L	K	L	Q	Q	Y	I	E	T	L	L	A	G	.	.	.	.	.	.	.	S	R	A	A	V	V	V	T	D	P	R	T	G	G	V	L
Query Conservation																									.	.																																	.	.	.	.	.	.	.
Alig confidence																									.	.																																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	N	S	I	L	A	G	T	D	G	I	I	T	Y	E	K	D	R	L	G	N	I	V	P	G	T	E	Q	V	S	Q	R	T	M	D	G	K	D	V	Y	T	T	I	S	S	P	L	Q	S	F	M	E	T	Q	M	D	A	F	Q	E	K	V	K	G	K	Y	M	T	A	T	L	V	S	A	K	T	G	E	I	L
Template Known Secondary structure		T	T	S	S					S	T	T	T	T	T	T	T	T	S	T	T				S				T	T													S																				S												S	S	S		B
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	V	S	T	P	S	Y	D	P	N	L	F	V	D	G	I	S	S	K	D	Y	S	A	L	L	N	D	P	N	T	P	L	V	N	R	A	T	Q	G	V	Y	P	P	A	S	T	V	K	P	Y	V	A	V	S	A	L	S	A	G	V	I	T	R	N	T	T	L	F	D	P	G	W	W	Q	L	P	G	S	E
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.																																										.								.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.																																										.								.	.
Template Sequence		A	T	T	Q	R	P	T	F	D	A	D	T	K	E	G	I	T	E	.	.	.	.	.	.	.	.	.	.	.	D	F	V	W	R	D	I	L	Y	Q	S	N	Y	E	P	G	S	T	M	K	V	M	M	L	A	A	A	I	D	N	N	T	F	P	G	G	E	V	F	N	S	.	S	E	L	K	I	A	D	.	.
Template Known Secondary structure						S	S				T	T	T	T		S	S	S	S	.	.	.	.	.	.	.	.	.	.	.							T	T	T	S							S	T	T												T				S	S						.	S				T	T	T	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.																																										.								.	.
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320												.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.	.	.
		365	.	.	.	.	370	.	.					.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure										.	.	.	.
Query SS confidence										.	.	.	.
Query Sequence		K	R	Y	R	D	W	K	K	.	.	.	.	W	G	H	G	R	L	N	V	T	R	S	L	E	E	S	A	D	T	F	F	Y	Q	V	A	Y	D	M	G	I	D	R	L	S	E	W	M	G	K	F	G	Y	G	H	Y	T	G	I	D	L	A	E	E	R	S	G	N	M	P	T	R	E	W	K	Q	K	R	F	K
Query Conservation										.	.	.	.
Alig confidence										.	.	.	.																																																											.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		A	T	I	R	D	W	D	V	N	E	G	L	T	G	G	R	M	M	T	F	S	Q	G	F	A	H	S	S	N	V	G	M	T	L	L	E	Q	K	M	G	D	A	T	W	L	D	Y	L	N	R	F	K	F	G	V	P	T	R	F	G	L	T	D	E	Y	A	G	Q	L	P	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S					G	G	G	G	T			S	S						S						T	T						T					T	T		T	T									T	T	T	T	S					S	S	S									.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	W	Y	Q	G	D	T	I	P	V	G	I	G	Q	G	Y	W	T	A	T	P	I	Q	M	S	K	A	L	M	I	L	I	N	D	G	I	V	K	V	P	H	L	L	M	S	T	A	E	D	G	K	Q	V	P	W	V	Q	P	H	E	P	P	V	G	D	I	H	S	G	Y	W	E	L	A	K	D	G	M	Y
Query Conservation
Alig confidence		.																.
Template Conservation		.																.
Template Sequence		.	A	D	N	I	V	N	I	A	Q	S	S	F	G	Q	G	.	I	S	V	T	Q	T	Q	M	I	R	A	F	T	A	I	A	N	D	G	V	M	L	E	P	K	F	I	S	A	I	Y	D	P	N	D	Q	T	A	R	K	S	Q	K	E	I	V	G	N	P	V	S	K	D	A	A	S	L	T	R	T	N	M	V
Template Known Secondary structure		.		S									T	T	T	S	S	.																T	T	T	T						B								S	S	S	S														S
Template Predicted Secondary structure		.																.
Template SS confidence
			439	440	.	.	.	.	.	.	.	.	.	450	.	.	.		.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.
		521	.	.	.	.								.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.
Query Sequence		G	V	A	N	R	.	.	.	.	.	.	.	P	N	G	T	A	H	K	Y	F	A	S	A	P	Y	K	I	A	A	K	S	G	T	A	Q	V	F	G	L	K	A	N	E	T	Y	N	A	H	K	I	A	E	R	L	R	D	H	K	L	M	T	A	F	A	P	Y	N	N	P	Q	V	A	V	A	M	I	L	E	N
Query Conservation							.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.																																				.	.	.	.	.
Template Conservation																																																	.	.	.	.	.
Template Sequence		L	V	G	T	D	P	V	Y	G	T	M	Y	N	H	S	T	G	K	P	T	V	T	V	P	G	Q	N	V	A	L	K	S	G	T	A	Q	I	A	D	E	K	N	G	G	Y	L	V	.	.	.	.	.	G	L	T	D	Y	I	F	S	A	V	S	M	S	P	A	E	N	P	D	F	I	L	Y	V	T	V	Q	Q
Template Known Secondary structure		T	T	S	S		S	S	S		S	S			S	S	S	S	S		S	S		B	T	T	B															S	S	S	S	S			.	.	.	.	.	S	T	T										S	S	S	S	S		S
Template Predicted Secondary structure																																																	.	.	.	.	.
Template SS confidence
		517	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.						.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.
		594	.			.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		G	G	.	.	A	G	P	A	V	G	T	L	M	R	Q	I	L	D	H	I	M	L	G	D	N	N	T	D	L	P	A	E	N	P	A	V	A	A	A	E	D
Query Conservation				.	.
Alig confidence				.	.
Template Conservation
Template Sequence		P	E	H	Y	S	G	I	Q	L	G	E	F	A	N	P	I	L	E	R	A	S	A	M	K	D	S	L	N	L	Q	T	T	A	K	A	L	E	Q	V	S	Q
Template Known Secondary structure			S	S																				T	T	T	T	S	T	T	S	S	S	T	T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		592	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.