Job Description P0ACR2 Confidence 99.55% Date Thu Jan 5 11:18:47 GMT 2012 Rank 33 Aligned Residues 195 % Identity 13% Template c3kosA_ PDB info PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional activator ampr; PDBTitle: structure of the ampr effector binding domain from citrobacter2 freundii Resolution 1.83 Å

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		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	Q	L	A	I	A	V	D	N	I	V	R	P	E	R	T	R	Q	M	I	V	D	F	Y	R	H	F	D	D	V	E	L	L	V	F	Q	E	V	F	N	G	V	W	D	A	L	S	D	G	R	V	E	L	A	I	G	A	T	R	A	I	P	V	G	G	R	Y	A	F	R	D	M	G	M	L	S	W	S	C
Query Conservation
Alig confidence																																																.	.	.														.	.
Template Conservation																																																.	.	.														.	.
Template Sequence		Q	E	K	L	K	I	G	V	V	G	T	F	A	I	G	C	L	F	P	L	L	S	D	F	K	R	S	Y	P	H	I	D	L	H	I	S	T	H	N	N	R	V	D	P	A	A	.	.	.	E	G	L	D	Y	T	I	R	Y	G	G	G	A	.	.	W	H	D	T	D	A	Q	Y	L	C	S	A	L	X	S	P
Template Known Secondary structure																	T													T	T										S							.	.	.		T		S								S		.	.		T	T
Template Predicted Secondary structure																																																.	.	.														.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.				.	140	.	.	.	.	.	.	.	.	.	150	.			.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.					.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.
Query SS confidence																																											.	.	.	.
Query Sequence		V	V	A	S	H	H	P	L	A	L	M	D	G	P	F	S	D	D	T	L	R	N	W	P	S	L	V	R	E	D	T	S	R	T	L	P	K	R	I	T	W	.	.	.	.	L	L	D	N	Q	K	R	V	V	V	P	D	W	E	S	S	A	T	C	I	S	A	G	L	C	I	G	M	V	P	T	H	F	A	K
Query Conservation																																											.	.	.	.
Alig confidence									.	.	.	.																															.	.	.	.
Template Conservation									.	.	.	.
Template Sequence		L	C	S	P	T	L	A	.	.	.	.	S	Q	I	Q	T	P	A	D	I	L	K	F	P	L	L	R	S	Y	R	R	D	E	W	A	L	W	X	Q	T	V	G	E	A	P	P	S	P	T	H	N	V	X	V	F	D	S	S	V	T	X	L	E	A	A	Q	A	G	X	G	V	A	I	A	P	V	R	X	F	T
Template Known Secondary structure			B						.	.	.	.	T	T		S	S	G	G	G	G	G	G	S						S		T	T									T	T						T	T	S						S											T	T	S		B					G	G	G
Template Predicted Secondary structure									.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.					.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		P	W	L	N	E	G	K	W	V	A	L	E	L	E	N	P	F	P	D	S	A	C	C	L	T	W	Q	Q	N	.	D	M	S	P	A	L	T	W	L	L	E	Y	L	G	D	S	E	T	L	N
Query Conservation																															.
Alig confidence												.																			.
Template Conservation												.
Template Sequence		H	L	L	S	S	E	R	I	V	Q	.	P	F	L	T	Q	I	D	L	G	S	Y	W	I	T	R	L	Q	S	R	P	E	T	P	A	X	R	E	F	S	R	W	L	T	G	V	L	H	K	T
Template Known Secondary structure						T	T	S	S	B		.						B		S									T	T	S
Template Predicted Secondary structure												.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.		.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions