Job Description P0AEB0 Confidence 2.18% Date Thu Jan 5 11:22:55 GMT 2012 Rank 44 Aligned Residues 262 % Identity 10% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		V	S	A	F	I	L	L	V	P	M	I	Y	I	F	V	Q	A	F	S	K	G	L	M	P	V	L	Q	N	L	A	D	P	D	M	L	H	A	I	W	L	T	V	M	I	A	L	I	A	V	P	V	N	L	V	F	G	I	L	L	A	W	L	V	T	R	F	N	F	P	G	R	Q	L	L	L	T	L	L	.	.
Query Conservation																																																																																.	.
Alig confidence																																																																																.	.
Template Conservation
Template Sequence		W	T	I	V	G	I	V	S	V	L	T	L	A	F	I	F	S	A	I	S	G	V	G	K	G	I	Q	Y	L	S	N	A	N	X	V	L	A	A	L	L	A	I	F	V	F	V	V	G	P	T	V	S	I	L	N	L	L	P	G	S	I	G	N	Y	L	S	N	F	F	Q	X	A	G	R	T	A	X	S	A	D
Template Known Secondary structure															T	T	G	G	G	T	T	S			S																								S																									T			T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
				107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	D	I	P	F	A	V	S	P	V	V	A	G	L	V	Y	L	L	F	Y	G	S	N	G	P	L	G	G	W	L	D	E	H	N	L	Q	I	M	F	S	W	P	G	M	V	L	V	T	I	F	V	T	C	P	F	V	V	R	E	L	V	P	V	M	L	S	Q	G	S	Q	E	D	E	A	A	I	L	L	G
Query Conservation		.	.
Alig confidence		.	.																																																																						.
Template Conservation																																																																									.
Template Sequence		G	T	A	G	E	W	L	G	S	W	T	I	F	Y	W	A	W	W	I	S	W	S	P	F	V	G	X	F	L	A	R	I	S	R	G	R	S	I	R	E	F	I	L	G	V	L	L	V	P	A	G	V	S	T	V	W	F	S	I	F	G	G	T	A	I	V	F	E	Q	N	G	.	E	S	I	W	G	D	G	A
Template Known Secondary structure		S								T	T										T	T												T	T	T																																				T	.						T	T
Template Predicted Secondary structure																																																																									.
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.		.	.	430	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.									.	.	.	230	.	.	.									.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.
Query Sequence		A	S	G	W	Q	M	F	R	R	V	T	L	P	N	I	R	W	A	L	L	Y	G	V	V	L	T	N	A	R	A	I	G	E	F	G	A	V	S	V	V	S	G	.	.	.	.	.	.	.	.	S	I	R	G	E	T	L	.	.	.	.	.	.	.	.	S	L	P	L	Q	I	E	L	L	E	Q	D	Y	N	T
Query Conservation																																												.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	E	Q	L	F	G	L	L	H	A	L	P	G	G	Q	I	X	G	I	I	A	X	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	G	Q	L	E	A	N	K	W	V	T	A	A	W	G	V	A	T	A	A	I	G	L	T	L	L	L	S	G	G	D	N	A	L
Template Known Secondary structure		S										T	S	T	T																															T	T	T	T		S	S																									G	G	G
Template Predicted Secondary structure
Template SS confidence
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	S	F	T	A	A	A	L	L	T	L	M	A	I	I	T	L	F	L	K	S	M	L	Q	W	R	L	E	N	Q	E	K	R	A	Q	Q	E	E	H	H	E	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	N	L	Q	N	V	T	I	V	A	A	T	P	F	L	F	V	V	I	G	L	X	F	A	L	V	K	D	L	S	N	D	V	I	Y	L	E	Y	R	E	Q	Q	R
Template Known Secondary structure																																T
Template Predicted Secondary structure
Template SS confidence
		516	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions