Job Description A5PFJ9 Confidence 100.00% Date Thu Jan 5 10:55:35 GMT 2012 Rank 1 Aligned Residues 364 % Identity 14% Template d1musa_ SCOP info Ribonuclease H-like motif Ribonuclease H-like Transposase inhibitor (Tn5 transposase) Resolution 1.90

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		H	L	K	R	L	N	S	L	T	L	A	C	H	A	L	L	D	C	K	T	L	T	L	T	E	L	G	R	N	L	P	T	K	A	R	T	K	H	N	I	K	R	I	D	R	L	L	G	N	R	H	L	H	K	E	.	R	L	A	V	Y	R	W	H	A	S	F	I	C	S	G	N	T	M	P	I	V	L	V	D
Query Conservation																																																									.
Alig confidence																														.	.	.	.	.	.																						.
Template Conservation																														.	.	.	.	.	.
Template Sequence		D	P	R	R	T	A	R	L	V	N	V	A	A	Q	L	A	K	Y	S	G	K	S	I	T	I	S	S	E	.	.	.	.	.	.	G	S	K	A	A	Q	E	G	A	Y	R	F	I	R	N	P	N	V	S	A	E	A	I	R	K	A	G	A	M	Q	T	V	K	L	A	Q	E	F	P	E	L	L	A	I	E	D
Template Known Secondary structure		S																	T	T	T	S						T	T	.	.	.	.	.	.	T													T		T	T																			T	T		S
Template Predicted Secondary structure																														.	.	.	.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.							.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.																	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.													.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	S	D	I	R	E	Q	K	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	V	L	R	A	S	V	A	L	H	G	R	S	.	V	T	L	.	.	.	.	.	.	.	.	.	.	.	.	Y	E	K	A	F	P	L	S	E	Q	C	S	K	K	A	H	D	Q	F	L	A	D	L	A	S
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	T	S	L	S	Y	R	H	Q	V	A	E	E	L	G	K	L	G	S	I	Q	K	A	S	R	G	W	W	V	H	S	V	L	L	L	E	A	T	T	F	R	T	V	G	L	L	H	Q	E	W	W	M	R	P	D	D	P	A	D	A	D	E	K	E	S	G	K	W	L	A	A	A	A	T	S	R	L	R	M	G
Template Known Secondary structure									S	G	G	G	G	G	S	B		S	S	S	T	T		S														T	T	T																S	S	G	G	G		S	S		G	G	G														G
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210				.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																					.																																												.	.	.
Query SS confidence																					.																																												.	.	.
Query Sequence		I	L	P	S	N	T	T	P	L	I	V	S	D	A	G	F	K	V	P	.	W	Y	K	S	V	E	K	L	G	W	Y	W	L	S	R	V	R	G	K	V	Q	Y	A	D	L	G	A	E	N	W	K	P	I	S	N	L	H	D	M	S	S	S	H	.	.	.	S	K	T	L	G	Y	K	R	L	T	K	S	N	P
Query Conservation																					.																																												.	.	.
Alig confidence				.	.																.																																												.	.	.
Template Conservation				.	.
Template Sequence		S	M	.	.	M	S	N	V	I	A	V	C	D	R	E	A	D	I	H	A	Y	L	Q	D	K	L	A	H	N	E	R	F	V	V	R	S	K	H	P	R	K	D	V	E	S	G	L	Y	L	Y	D	H	L	K	N	Q	P	E	L	G	G	Y	Q	I	S	I	P	Q	K	G	V	V	D	K	R	G	K	R	K	N
Template Known Secondary structure		G	G	.	.	G	G	G							G	G	G												T	T									S			B		T	T	T		S	B							T	S																		S	S
Template Predicted Secondary structure				.	.
Template SS confidence
		178	.			180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.			.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																																										.	.													.
Query SS confidence																																										.	.													.
Query Sequence		I	S	C	Q	I	L	L	Y	K	S	R	S	K	G	R	K	N	Q	R	S	T	R	T	H	C	H	H	P	S	P	K	I	Y	S	A	S	A	K	E	P	.	.	W	I	L	A	T	N	L	P	V	E	I	R	.	T	P	K	Q	L	V	N	I	Y	S	K	R	M	Q	I	E	E	T	F	R	D	L	K	S	P
Query Conservation																																										.	.													.
Alig confidence																																										.	.													.																									.
Template Conservation																																																																																	.
Template Sequence		R	P	A	R	K	A	S	L	S	L	R	S	G	R	I	T	L	K	Q	G	N	I	T	L	N	A	V	L	A	E	E	I	N	P	P	K	G	E	T	P	L	K	W	L	L	L	T	S	E	P	V	E	S	L	A	Q	A	L	R	V	I	D	I	Y	T	H	R	W	R	I	E	E	F	H	K	A	W	K	T	.
Template Known Secondary structure																			T	G	G	G												S			S	S	S										S	S			S	S													T	T												T	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	G	L	G	L	R	H	S	R	T	S	S	S	E	R	F	D	I	M	L	L	I	A	L	M	L	Q	L	T	C	W	L	A	G	V	H	A	Q	K	Q	G	W	D	K	H	F	Q	A	N	T	V	R	N	R	N	V	L	S	T	V	R	L	G	M	E	V	L	R	H	S	G	Y	T	I	T	R	E	D	S
Query Conservation
Alig confidence		.	.																																			.																																					.	.
Template Conservation		.	.																																			.																																					.	.
Template Sequence		.	.	G	A	G	A	E	R	Q	R	M	E	K	P	D	N	L	E	R	M	V	S	I	L	S	F	V	A	V	R	L	L	Q	L	R	E	.	S	F	T	P	P	S	Q	S	A	E	T	V	L	T	P	D	E	C	Q	L	L	G	Y	L	D	K	G	K	R	K	R	K	E	K	A	G	.	.	S	L	Q	W	A
Template Known Secondary structure		.	.	T	T		G	G	G				S	S																								.								B	G	G	G	T	S													T	T	T			T	T	S		T	T	.	.	B
Template Predicted Secondary structure		.	.																																			.																																					.	.
Template SS confidence
				335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.		.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.			.	.	.	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	A	A	T	L	L	T	Q	N	L	F	T	H	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	M	A	I	A	R	L	G	G	F	M	D	S	K	R
Template Known Secondary structure									T	T				T	T	S
Template Predicted Secondary structure
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions