Job Description P27300 Confidence 97.89% Date Thu Jan 5 11:43:46 GMT 2012 Rank 2 Aligned Residues 183 % Identity 20% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	R	A	W	R	A	P	V	P	V	V	V	V	G	N	L	T	A	G	G	N	G	K	T	P	V	V	V	W	L	V	E	Q	L	Q	Q	R	G	I	R	V	G	V	V	S	R	G	Y	G	G	K	A	E	S	Y	P	L	L	L	S	A	D	T	T	T	A	Q	A	G	D	E	P	V	L	I	Y	Q	R	T
Query Conservation
Alig confidence																	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	L	N	P	K	K	Q	N	V	I	L	L	V	G	.	.	.	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	L	K	Q	L	A	E	K	I
Template Known Secondary structure						S	S	S									.	.	.		S	S	S	S	T	T																							S				T	T	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	S							S
Template Predicted Secondary structure																	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.				.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.																.	.	.	.	.	150	.	.	.	.
		118	.	120	.	.					.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.															.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	A	P	V	A	.	.	.	.	V	S	P	V	R	S	D	A	V	K	A	I	L	A	Q	H	P	D	V	Q	I	I	V	T	D	D	G	L	Q	H	Y	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	R	D	V	E	I	V	V	I	D	G	V	R	R	F	G	N	G	W	W	L	P	A	G
Query Conservation							.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template Conservation																																																																							.	.
Template Sequence		H	V	P	I	Y	G	D	E	T	R	T	K	S	P	V	D	I	V	K	E	G	M	E	K	F	K	K	A	D	V	L	I	I	D	T	A	G	R	H	K	E	E	K	G	L	L	E	E	M	K	Q	I	K	E	I	T	N	P	D	E	I	I	L	V	I	D	G	T	I	.	.	G	Q	Q	A	G	I	Q	A	K
Template Known Secondary structure		S							S	S	S			S	S	S	T	T							T	T	S	S		S									S		S	S											T	T	S	S	S			S								G	G	G	.	.	G	G	G
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.					.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																												.	.	.	.
Query SS confidence																												.	.	.	.
Query Sequence		P	M	R	E	R	A	G	R	L	K	S	V	D	A	V	I	V	N	G	G	V	P	R	S	G	E	.	.	.	.	I	P	M	H	L	L	P	G	Q	A	V	N	L	R	T	G	T	R	C	D	V	A	Q	L	E	H	V	V	A	M	A	G	I	G	H	P	P	R	F	F	A	T	L	K	M	C	G
Query Conservation																												.	.	.	.
Alig confidence						.	.	.																				.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.																																																.	.	.	.	.	.	.	.	.
Template Sequence		A	F	K	E	.	.	.	A	V	G	E	I	G	S	I	I	V	T	K	L	D	G	S	A	K	G	G	G	A	L	S	A	V	A	E	T	K	A	P	I	K	F	I	G	I	G	E	G	I	D	D	L	E	P	.	.	.	.	.	.	.	.	.	F	D	P	K	K	F	I	S	R	L	L	G	M	G
Template Known Secondary structure					T	.	.	.	T	S		S									S	S	S		S	T	T										S	S									S	S	S	S	S	S			B	.	.	.	.	.	.	.	.	.											T		S	S
Template Predicted Secondary structure						.	.	.																																																.	.	.	.	.	.	.	.	.
Template SS confidence
		233	.	.	.				.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.										.	.	.	.	.	.	290	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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