Job Description P27300 Confidence 96.94% Date Thu Jan 5 11:43:46 GMT 2012 Rank 11 Aligned Residues 81 % Identity 21% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		V	V	V	V	G	N	L	T	A	G	G	N	G	K	T	P	V	V	V	W	L	V	E	Q	L	Q	Q	R	G	I	R	V	G	V	V	S	R	G	Y	G	G	K	A	E	S	Y	P	L	L	L	S	A	D	T	T	T	A	Q	A	G	D	E	P	V	L	I	Y	Q	R	T	D	A	P	V	A	V	S	P	V	.
Query Conservation																																																																																	.
Alig confidence						.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation						.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	I	M	F	.	.	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	T	C	L	I	C	A	D	T	F	R	A	G	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	L	K	Q	N	A	T	K	A	R	I	P	F	Y	G	S	Y	T	E
Template Known Secondary structure						.	.			S	T	T	S	S															T	T											S	S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T
Template Predicted Secondary structure						.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		103	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.																.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
								127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	R	S	D	A	V	K	A	I	L	A	Q	H	P	D	V	Q	I	I	V	T	D
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.												.	.
Template Conservation																			.	.
Template Sequence		M	D	P	V	I	I	A	S	E	G	V	E	K	F	K	N	E	.	.	N	F	E	I	I	I	V	D
Template Known Secondary structure		S																T	.	.	T
Template Predicted Secondary structure																			.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.			.	.	.	.	.	.	.	190

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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