Job Description P27300 Confidence 96.30% Date Thu Jan 5 11:43:46 GMT 2012 Rank 19 Aligned Residues 132 % Identity 19% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		V	V	V	V	G	N	L	T	A	G	G	N	G	K	T	P	V	V	V	W	L	V	E	Q	L	Q	Q	R	.	G	I	R	V	G	V	V	S	R	G	Y	G	G	K	A	E	S	Y	P	L	L	L	S	A	D	T	T	T	A	Q	A	G	D	E	P	V	L	I	Y	Q	R	T	D	A	P	V	A	V	S	P	V
Query Conservation																														.
Alig confidence						.	.																							.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	V	L	M	.	.	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	D	V
Template Known Secondary structure						.	.			S	S	S	S	S	S	T	T	T										T	S	S	S					B						S	S	S		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T							S	S
Template Predicted Secondary structure						.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		102	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.																.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		127								.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.															.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	.	.	.	.	.	.	.	S	D	A	V	K	A	I	L	A	Q	H	P	D	V	Q	I	I	V	T	D	D	G	L	Q	H	Y	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	R	D	V	E	I	V	V	I	D	G	V	R	R	F	G	N	G	W	W	L	P	A	G	P	M	R	E	R	A
Query Conservation			.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.											.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template Conservation																				.	.																																												.	.
Template Sequence		G	Q	K	P	V	D	I	V	N	A	A	L	K	E	A	K	L	K	.	.	F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M	T	.	.	G	Q	D	A	A	N	T	A	K	A	F	N	E	A	L
Template Known Secondary structure					T	T													T	.	.	T		S											S	S																		S								T	T	T	.	.	G	G	G	G									T	T
Template Predicted Secondary structure																				.	.																																												.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.			.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.			.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	L	K	S	V	D	A	V	I	V	N	G	G	V	P	R	S	G
Query Conservation
Alig confidence			.	.	.	.
Template Conservation			.	.	.	.
Template Sequence		P	.	.	.	.	L	T	G	V	V	L	T	K	V	D	G	D	A	R
Template Known Secondary structure		S	.	.	.	.	S								S	S	S		S
Template Predicted Secondary structure			.	.	.	.
Template SS confidence
		241					.	.	.	.	.	.	.	.	250	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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