Job Description P27300 Confidence 97.96% Date Thu Jan 5 11:43:46 GMT 2012 Rank 1 Aligned Residues 198 % Identity 16% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	W	L	Y	G	L	V	S	G	A	I	R	L	C	Y	K	L	K	L	K	R	A	W	R	A	P	V	P	V	V	V	V	G	N	L	T	A	G	G	N	G	K	T	P	V	V	V	W	L	V	E	Q	L	Q	Q	R	G	I	R	V	G	V	V	S	R	G	Y	G	G	K	A	E	S	Y	P	L	L	L	S	A
Query Conservation
Alig confidence																																			.	.	.																																						.	.	.	.	.	.	.
Template Conservation																																			.	.	.																																						.	.	.	.	.	.	.
Template Sequence		V	I	L	A	T	V	Y	E	A	L	K	E	A	L	G	G	E	A	R	L	P	V	L	K	D	R	N	L	W	F	L	V	G	.	.	.	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	.	.	.	.	.	.	.
Template Known Secondary structure															T	T	S	S								S	S								.	.	.		T	T	S	S															T	T										S	S						.	.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.	.																																						.	.	.	.	.	.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.				.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.								.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.														.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.																					.							.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.																					.							.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	T	T	T	A	Q	A	G	D	E	P	V	L	I	Y	Q	R	T	D	A	P	V	A	V	S	P	V	R	.	.	.	.	.	.	.	S	D	A	V	K	A	I	L	A	Q	H	P	D	V	Q	I	I	V	T	D	.	D	G	L	Q	H	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	A	R	D
Query Conservation																														.	.	.	.	.	.	.																					.							.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.											.	.									.							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																																						.	.
Template Sequence		.	.	.	.	.	.	.	.	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	.	.	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G	P	D
Template Known Secondary structure		.	.	.	.	.	.	.	.											T								T	T																		.	.	T		S										S	S																			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																						.	.
Template SS confidence
										143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.			180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.					.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.
Query SS confidence																																																	.	.	.	.
Query Sequence		V	E	I	V	V	I	D	G	V	R	R	F	G	N	G	W	W	L	P	A	G	P	M	R	E	R	A	G	R	L	K	S	V	D	A	V	I	V	N	G	G	V	P	R	S	G	E	.	.	.	.	I	P	M	H	L	L	P	G	Q	A	V	N	L	R	T	G	T	R	C	D	V	A	Q	L	E	H	V	V	A
Query Conservation																																																	.	.	.	.
Alig confidence												.	.																	.	.	.	.																.	.	.	.																									.	.	.	.	.
Template Conservation												.	.																	.	.	.	.																																												.	.	.	.	.
Template Sequence		E	V	L	L	V	L	D	A	M	T	.	.	G	Q	E	A	L	S	V	A	R	A	F	D	E	K	V	G	.	.	.	.	V	T	G	L	V	L	T	K	L	D	G	D	A	R	G	G	A	A	L	S	A	R	H	V	T	G	K	P	I	Y	F	A	G	V	S	E	K	P	E	G	L	E	P	.	.	.	.	.
Template Known Secondary structure									S	S	S	.	.		S													S		.	.	.	.									S	S	S		S												S							B				S	S	G	G	G		B		.	.	.	.	.
Template Predicted Secondary structure												.	.																	.	.	.	.																																												.	.	.	.	.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.					.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	G	I	G	H	P	P	R	F	F	A	T	L	K	M	C	G
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	F	Y	P	E	R	L	A	G	R	I	L	G	M	G
Template Known Secondary structure		.	.	.	.													S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						282	.	.	.	.	.	.	.	290	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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