Job Description P27300 Confidence 95.62% Date Thu Jan 5 11:43:46 GMT 2012 Rank 30 Aligned Residues 199 % Identity 14% Template c2eyqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor Resolution 3.20 Å

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		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.														.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Query Sequence		G	N	G	K	T	P	V	V	V	W	L	V	E	Q	L	Q	Q	R	G	I	R	V	G	V	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	Y	G	G	K	A	E	S	Y	P	L	L	L	S	A	D	T	T	T	A	Q	A	G	D	E	P	V	L	I	Y	Q	R	T	D	.	A	P	V	A	V
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.												.
Template Conservation																																																															.	.
Template Sequence		G	F	G	K	T	E	V	A	M	R	A	A	F	L	A	V	D	N	H	K	Q	V	A	V	L	V	P	T	T	L	L	A	Q	Q	H	Y	D	N	F	R	D	R	F	A	N	W	P	V	R	I	E	M	I	S	R	F	R	S	A	K	E	.	.	Q	T	Q	I	L	A	E	V	A	E	G	K	I	D	I	L	I
Template Known Secondary structure			T	T	T													T	T	T								S	S															S	T	T	T	T							S	T	T	S					.	.										T	T			S
Template Predicted Secondary structure																																																															.	.
Template SS confidence
		631	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.			.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.				.	.	.	.	.	.					.	150	.	.	.					.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.							.	.
Predicted Secondary structure																					.	.	.							.	.	.	.						.	.	.	.																																.	.	.	.	.	.
Query SS confidence																					.	.	.							.	.	.	.						.	.	.	.																																.	.	.	.	.	.
Query Sequence		S	P	V	R	S	D	A	V	K	A	I	L	A	Q	H	P	D	V	Q	.	.	.	I	I	V	T	D	D	.	.	.	.	G	L	Q	H	Y	.	.	.	.	R	L	A	R	D	V	E	I	V	V	I	D	G	V	R	R	F	G	N	G	W	W	L	P	A	G	P	M	R	E	R	.	.	.	.	.	.	A	G
Query Conservation																					.	.	.							.	.	.	.						.	.	.	.																																.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.												.	.	.							.	.	.	.						.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	T	.	.	.	.	.	.	H	K	L	L	Q	S	D	V	K	F	K	D	L	G	L	L	I	V	D	E	E	H	R	F	G	V	R	H	K	E	R	I	K	A	M	R	A	N	V	D	I	L	T	L	T	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	P	R	T	L	N	M	A
Template Known Secondary structure				.	.	.	.	.	.	T					S					S	S								S	G	G	G	S													T	T	S							S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		709	710							.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.																	.	.	760	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.			.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																																					.															.	.
Query SS confidence																																																					.															.	.
Query Sequence		R	L	K	S	V	D	A	V	I	V	N	G	G	V	P	R	S	G	E	I	P	M	H	L	L	P	G	Q	A	V	N	L	R	T	G	T	R	C	D	V	A	Q	L	E	H	V	V	A	M	A	G	.	I	G	H	P	P	R	F	F	A	T	L	K	M	C	.	.	G	V	Q	P	E	K	C	V	P	L	A	D
Query Conservation																																																					.															.	.
Alig confidence																																																					.															.	.								.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		M	S	G	M	R	D	L	S	I	I	A	T	P	P	A	R	R	L	A	V	K	T	F	V	R	E	Y	D	S	M	V	V	R	E	A	I	L	R	E	I	L	R	G	G	Q	V	Y	Y	L	Y	N	D	V	E	N	I	Q	K	A	A	E	R	L	A	E	L	V	P	E	A	R	I	A	I	G	.	.	.	.	.
Template Known Secondary structure			T	T	T	S											B		B																							T	T	T										S	S														T	T	S						.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		767	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.						.	.	280	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.
Query SS confidence																.	.	.	.	.
Query Sequence		H	Q	S	L	N	H	A	D	V	S	A	L	V	S	.	.	.	.	.	A	G	Q	T	L	V	M	T
Query Conservation																.	.	.	.	.
Alig confidence																.	.	.	.	.
Template Conservation
Template Sequence		H	G	Q	M	R	E	R	E	L	E	R	V	M	N	D	F	H	H	Q	R	F	N	V	L	V	C	T
Template Known Secondary structure			S	S															T	T	S							S
Template Predicted Secondary structure
Template SS confidence
		842	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions