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Job DescriptionP27300
Confidence95.62%DateThu Jan 5 11:43:46 GMT 2012
Rank30Aligned Residues199
% Identity14%Templatec2eyqA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   58.60.........70.........80... ......90.........100.........110........ .120...
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Query Sequence  GNGKTPVVVWLVEQLQQRGIRVGVVS. . . . . . . . . . . . . RGYGGKAESYPLLLSADTTTAQAGDEPVLIYQRTD. APVAV
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Template Sequence  GFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKE. . QTQILAEVAEGKIDILI
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   631........640.........650.........660.........670.........680.........690. ........700........
 
   124.....130.........140.. ...... .150... ......160.........170.........180.... ..
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Query Sequence  SPVRSDAVKAILAQHPDVQ. . . IIVTDD. . . . GLQHY. . . . RLARDVEIVVIDGVRRFGNGWWLPAGPMRER. . . . . . AG
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Template Sequence  GT. . . . . . HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTAT. . . . . . . . . . . . . . . . PIPRTLNMA
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   709710 .........720.........730.........740.........750....... ..760......
 
   187..190.........200.........210.........220.........230....... ..240.........250. ........260...
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Query Sequence  RLKSVDAVIVNGGVPRSGEIPMHLLPGQAVNLRTGTRCDVAQLEHVVAMAG. IGHPPRFFATLKMC. . GVQPEKCVPLAD
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Template Sequence  MSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIG. . . . .
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   767..770.........780.........790.........800.........810.........820.........830.........840.
 
   264.....270....... ..280.....
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Query Sequence  HQSLNHADVSALVS. . . . . AGQTLVMT
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Template Sequence  HGQMRERELERVMNDFHHQRFNVLVCT
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   842.......850.........860........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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