Job Description P27300 Confidence 97.85% Date Thu Jan 5 11:43:46 GMT 2012 Rank 3 Aligned Residues 180 % Identity 23% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	R	A	W	R	A	P	V	P	V	V	V	V	G	N	L	T	A	G	G	N	G	K	T	P	V	V	V	W	L	V	E	Q	L	Q	Q	R	G	I	R	V	G	V	V	S	R	G	Y	G	G	K	A	E	S	Y	P	L	L	L	S	A	D	T	T	T	A	Q	A	G	D	E	P	V	L	I	Y	Q	R	T
Query Conservation
Alig confidence																	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	V	N	P	T	K	L	P	F	I	I	M	L	V	G	.	.	.	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	L	L	Q	L	G	N	Q	I
Template Known Secondary structure				S		S	S	S	S								.	.	.	S	S	S	S	S	S	T	T	T										T	T	S					B						S	S	S		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T
Template Predicted Secondary structure																	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.				.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140																.	.	.	.	.	.	.	.	.	150
		118	.	120	.	.	.	.	.	.	.								.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.																.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.																					.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.																					.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	A	P	V	A	V	S	P	V	R	.	.	.	.	.	.	.	S	D	A	V	K	A	I	L	A	Q	H	P	D	V	Q	I	I	V	T	D	.	D	G	L	Q	H	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	A	R	D	V	E	I	V	V	I	D	G	V	R	R	F	G	N	G	W
Query Conservation												.	.	.	.	.	.	.																					.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.											.	.									.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation																													.	.																																														.	.
Template Sequence		G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	.	.	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I	.	.	G	Q	K	A
Template Known Secondary structure		T							S	S				T	T													T	.	.	T		S									S			S	S	T																		S								T	T	T	.	.	G	G	G	G
Template Predicted Secondary structure																													.	.																																														.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.					.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure																																	.	.	.	.
Query SS confidence																																	.	.	.	.
Query Sequence		W	L	P	A	G	P	M	R	E	R	A	G	R	L	K	S	V	D	A	V	I	V	N	G	G	V	P	R	S	G	E	.	.	.	.	I	P	M	H	L	L	P	G	Q	A	V	N	L	R	T	G	T	R	C	D	V	A	Q	L	E	H	V	V	A	M	A	G	I	G	H	P	P	R	F	F	A	T	L	K	M
Query Conservation																																	.	.	.	.
Alig confidence														.	.	.	.																.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.																																												.	.	.	.	.	.	.	.	.
Template Sequence		Y	D	L	A	S	R	F	H	Q	A	S	P	.	.	.	.	I	G	S	V	I	I	T	K	M	D	G	T	A	K	G	G	G	A	L	S	A	V	V	A	T	G	A	T	I	K	F	I	G	T	G	E	K	I	D	E	L	E	T	.	.	.	.	.	.	.	.	.	F	N	A	K	R	F	V	S	R	I	L	G
Template Known Secondary structure										T	T		S	.	.	.	.	S								S	S	S		S			T								T	T	T			B						S	S	S	T	T					.	.	.	.	.	.	.	.	.			T							T	T
Template Predicted Secondary structure														.	.	.	.																																												.	.	.	.	.	.	.	.	.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.					.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.										.	.	.	.	.	.	.	.	290	.	.	.
		251	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		294	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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