Job Description P27300 Confidence 81.48% Date Thu Jan 5 11:43:46 GMT 2012 Rank 105 Aligned Residues 175 % Identity 14% Template c1a1vA_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:protein (ns3 protein); PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna Resolution 2.20 Å

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		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	G	K	T	P	V	V	V	W	L	V	E	Q	L	Q	Q	R	G	I	R	V	G	V	V	S	R	G	Y	G	G	K	A	E	S	Y	P	L	L	L	S	A	D	T	T	T	A	Q	A	G	D	E	P	V	L	I	Y	Q	R	T	D	A	P	V	A	V	S	P	V	R	S	D	A	V	K	A	I	L	A	Q
Query Conservation
Alig confidence							.	.	.																			.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Conservation							.	.	.																			.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Sequence		G	S	G	K	S	.	.	.	T	K	V	P	A	A	Y	A	A	Q	G	Y	K	V	L	V	L	N	.	.	.	.	.	.	.	.	.	.	P	S	V	A	A	T	L	.	.	.	.	.	.	.	G	F	G	A	Y	M	S	K	A	H	G	V	D	P	N	I	R	T	G	V	.	.	.	.	.	.	.	R	T	I
Template Known Secondary structure		T	S		T	T	.	.	.	T								T	T	T								.	.	.	.	.	.	.	.	.	.	S							.	.	.	.	.	.	.											S								S	S	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.																			.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template SS confidence
		207	.	.	210	.				.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.											230	.	.	.	.	.	.								.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.								.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.			150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.																																																													.	.	.	.	.	.
Query SS confidence														.	.																																																													.	.	.	.	.	.
Query Sequence		H	P	D	V	Q	I	I	V	T	D	D	G	.	.	L	Q	H	Y	R	L	A	R	D	V	E	I	V	V	I	D	G	V	R	R	F	G	N	G	W	W	L	P	A	G	P	M	R	E	R	A	G	R	L	K	S	V	D	A	V	I	V	N	G	G	V	P	R	S	G	E	I	P	M	H	.	.	.	.	.	.
Query Conservation														.	.																																																													.	.	.	.	.	.
Alig confidence														.	.																																																													.	.	.	.	.	.
Template Conservation
Template Sequence		T	T	G	S	P	I	T	Y	S	T	Y	G	K	F	L	A	D	G	G	S	G	G	A	Y	D	I	I	I	C	D	E	C	H	S	T	D	A	T	S	I	L	G	I	G	T	V	L	D	Q	A	E	T	A	G	A	R	L	V	V	L	A	T	A	T	P	P	G	S	V	T	V	P	H	P	N	I	E	E	V	A
Template Known Secondary structure						S												T	T							S						T	T	T			S														T	T	T	T	T		S							S	S		T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																													.
Query SS confidence		.																													.
Query Sequence		.	L	L	P	G	Q	A	V	N	L	R	T	G	T	R	C	D	V	A	Q	L	E	H	V	V	A	M	A	G	.	I	G	H	P	P	R	F	F	A	T	L	K	M	C	G	V	Q	P	E	K	C	V
Query Conservation		.																													.
Alig confidence		.																													.
Template Conservation
Template Sequence		L	S	T	T	G	E	I	P	F	Y	G	K	A	I	P	L	E	V	I	K	G	G	R	H	L	I	F	C	H	S	K	K	K	C	D	E	L	A	A	K	L	V	A	L	G	I	N	A	V	A	Y	Y
Template Known Secondary structure				S		S	S				T	T					T					S	S							S	S														T	T
Template Predicted Secondary structure
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions