Return to main results Retrieve Phyre Job Id

Job DescriptionP0ACQ0
Confidence99.96%DateThu Jan 5 11:18:41 GMT 2012
Rank47Aligned Residues267
% Identity16%Templated8abpa_
SCOP infoPeriplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like
Resolution1.49

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   61........70.........80.........90.........100.........110.........120.........130..... ....
Predicted Secondary structure 
























.



Query SS confidence 










































































.



Query Sequence  TIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQ. RYPT
Query Conservation   
                                                                         .    
Alig confidence 





































.



































.



Template Conservation   

 
      
       
    
   
         .
       
   
    




                   
Template Sequence  KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP. DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYD
Template Known Secondary structure  S
TTST

.STT


S
GGGTT
Template Predicted Secondary structure 









.











Template SS confidence 















































































   4.....10.........20.........30.........40. ........50.........60.........70.........80..
 
   140.........150. ........160.........170......... 180.........190.........200......
Predicted Secondary structure 





......








.......








Query SS confidence 











. . . . . .



























. . . . . . .


























Query Sequence  VPTVMMDWAPFD. . . . . . GDSDLIQDNSLLGGDLATQYLIDKGHTR. . . . . . . IACITGPLDKTPARLRLEGYRAAMKRA
Query Conservation              ......     
  
           
   
   .......
              
  

       
Alig confidence 











......



























.......


























Template Conservation 
 

                   
  
    
      
                             
  
        
Template Sequence  MKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAA
Template Known Secondary structure 
SS

B
TTS
B
TTS

T

GGG
TTS
Template Predicted Secondary structure 

































Template SS confidence 















































































   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   207..210.. .......220.........230.........240 .........250.........260.........270.........280..
Predicted Secondary structure 





.









..










.
Query SS confidence 





.



























. .









































.
Query Sequence  GLNIPD. GYEVTGDFEFNGGFDAMRQLLSHPLRPQ. . AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFM.
Query Conservation 
     .                    
       ..

    
  
      
   
  

 

 


 
        .
Alig confidence 





.



























..



























.












.
Template Conservation                                        
    
  
 
   
    
       .


 
         
Template Sequence  GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADII. GIGINGVDAVSELS
Template Known Secondary structure  T

GGG
SSSSTT
TT
S
SSTT

GGG.SSGGGT
Template Predicted Secondary structure 




























.


Template SS confidence 















































































   163......170.........180.........190.........200.........210.........220....... ..230.........240.
 
   283......290.........300.........310..... ....320.........
Predicted Secondary structure  ....











.


Query SS confidence  . . . .
































.













Query Sequence  . . . . TPPLTTIHQPKDELGELAIDVLIHRITQPTLQQ. QRLQLTPILMERGS
Query Conservation  .... 
 



       
  

  
   
 
     .    
   

 
 
Alig confidence  ....
































.













Template Conservation           

 
     
  

  
   
 
           
  



 
Template Sequence  KAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN
Template Known Secondary structure  SSS

S






S


TTT
Template Predicted Secondary structure 




















Template SS confidence 



















































   242.......250.........260.........270.........280.........290...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions