Job Description P0ACQ0 Confidence 95.98% Date Thu Jan 5 11:18:41 GMT 2012 Rank 86 Aligned Residues 205 % Identity 11% Template c3qi7A_ PDB info PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution Resolution 1.86 Å

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		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.														90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Query Sequence		H	T	I	G	M	L	I	T	A	S	T	N	P	F	Y	S	E	L	V	R	G	V	E	R	S	C	F	E	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	L	V	L	C	N	T	E	G	D	E	Q	R	M	N	R	N	L	E	T	L	M	.	.	.	Q	K	R	V	D	G	L	L	L	L	C
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Alig confidence																			.	.												.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Conservation																			.	.
Template Sequence		F	K	V	A	V	V	T	Q	P	L	S	E	N	K	V	Q	Y	.	.	N	X	V	E	E	X	A	K	E	Y	E	E	E	N	K	I	D	K	T	K	V	K	Q	T	I	K	H	V	V	L	P	E	N	F	T	S	N	I	D	S	A	I	N	K	I	V	K	L	A	D	D	K	E	V	Q	A	I	V	V	S	T
Template Known Secondary structure											T	T	T						.	.														T	T																	T	T	G	G	G	G										G	G	G	G		T	T
Template Predicted Secondary structure																			.	.
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.			.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.								.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.																																							.	.
Query SS confidence																																.	.	.	.	.	.	.																																							.	.
Query Sequence		T	E	T	H	Q	P	S	R	E	I	M	Q	R	Y	P	T	V	P	T	V	M	M	D	W	A	P	F	D	G	D	.	.	.	.	.	.	.	S	D	L	I	Q	D	N	S	L	L	G	G	D	L	A	T	Q	Y	L	I	D	K	G	H	T	R	I	A	C	I	T	G	P	L	D	K	T	P	.	.	A	R	L
Query Conservation																																.	.	.	.	.	.	.																																							.	.
Alig confidence																																.	.	.	.	.	.	.																																							.	.
Template Conservation
Template Sequence		D	Q	A	G	L	L	P	A	L	Q	K	V	K	E	K	R	P	E	I	I	T	I	S	A	P	X	G	D	D	K	N	Q	L	S	Q	F	V	D	V	N	L	G	V	S	A	E	E	R	G	K	V	L	A	E	R	S	K	E	X	G	A	K	A	F	I	H	Y	A	S	T	D	D	L	K	D	V	N	I	A	K
Template Known Secondary structure		S	S															T	T	S					S	S			S									S	S																					T	T		S								T	T	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.							.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.
Query Sequence		R	L	E	G	Y	R	A	A	M	K	R	A	G	L	N	I	P	D	G	Y	E	V	T	G	D	F	E	.	.	.	.	.	.	F	N	G	G	F	D	A	M	R	Q	L	L	S	H	P	L	R	P	Q	A	V	F	T	G	N	D	A	M	A	V	G	V	Y	Q	A	L	Y	Q	A	E	L	Q	V	P	Q
Query Conservation																													.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.
Template Conservation
Template Sequence		R	L	E	X	I	K	E	T	C	K	N	I	G	L	P	F	V	Q	V	N	T	P	N	I	N	T	E	E	D	K	N	K	V	K	Q	F	L	N	E	D	I	E	K	Q	V	K	K	Y	G	K	D	I	N	V	F	G	V	N	E	Y	X	D	E	V	I	L	T	K	A	L	E	L	K	Y	I	V	A	E
Template Known Secondary structure													T	T												S	S	T																							S							S	S																	B	B
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions