Job Description P0ACQ0 Confidence 100.00% Date Thu Jan 5 11:18:41 GMT 2012 Rank 4 Aligned Residues 315 % Identity 21% Template c3h5tA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from corynebacterium glutamicum Resolution 2.53 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	M	K	D	V	A	R	L	A	G	V	S	T	S	T	V	S	H	V	I	N	K	D	R	F	V	S	E	A	I	T	A	K	V	E	A	A	I	K	E	L	N	Y	A	P	S	A	L	A	R	S	L	K	L	N	Q	T	H	T	I	G	M	L	I	T	A	S	T	N	P	F	Y	S	E	L	V	R	G	V
Query Conservation
Alig confidence																																																	.	.	.	.	.															.	.	.
Template Conservation																																																	.	.	.	.	.															.	.	.
Template Sequence		G	T	L	A	S	I	A	A	K	L	G	I	S	R	T	T	V	S	N	A	Y	N	R	P	E	Q	L	S	A	E	L	R	Q	R	I	L	D	T	A	E	D	M	G	Y	A	G	A	.	.	.	.	.	I	G	V	L	L	T	E	D	L	T	Y	A	F	E	.	.	.	D	M	A	S	V	D	F	L	A	G	V
Template Known Secondary structure		T										T	S												G	G	G	S															T	T					.	.	.	.	.						S	S		T	T					.	.	.	S
Template Predicted Secondary structure																																																	.	.	.	.	.															.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.						.	.	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	S	C	F	E	R	G	Y	S	L	V	L	C	N	T	E	G	D	E	Q	R	M	N	R	N	L	E	T	L	M	Q	K	R	V	D	G	L	L	L	L	C	T	E	T	H	Q	P	S	R	E	I	M	Q	R	Y	P	T	V	P	T	V	M	M	D	W	A	P	F	D	G	D	S	D	L	I	Q	D	N	S
Query Conservation
Alig confidence																																															.	.
Template Conservation																																															.	.
Template Sequence		A	Q	A	A	G	D	T	Q	L	T	L	I	P	A	S	P	A	S	S	V	D	H	V	S	A	Q	Q	L	V	N	N	A	A	V	D	G	V	V	I	Y	S	V	A	K	G	.	.	D	P	H	I	D	A	I	R	A	R	G	L	P	A	V	I	A	D	Q	P	A	R	E	E	G	M	P	F	I	A	P	N	N
Template Known Secondary structure					S	S	S												T	T												T				S						S			T	T	.	.											T							S	S			S		T	T
Template Predicted Secondary structure																																															.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.																		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Query Sequence		L	L	G	G	D	L	A	T	Q	Y	L	I	D	K	G	H	T	R	I	A	C	I	T	G	P	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	T	P	A	R	L	R	L	E	G	Y	R	A	A	M	K	R	A	G	L	N	I	P	.	D	G	Y	E	V	T	G	D	F	E	F	N
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation
Template Sequence		R	K	A	I	A	P	A	A	Q	A	L	I	D	A	G	H	R	K	I	G	I	L	S	I	R	L	D	R	A	N	N	D	G	E	V	T	R	E	R	L	E	N	A	Q	Y	Q	V	Q	R	D	R	V	R	G	A	M	E	V	F	I	E	A	G	I	D	P	G	T	V	P	I	M	E	C	W	I	N	N	R	Q
Template Known Secondary structure					T										T	T			S									S	S	S													T				T	T																T			G	G	G	S						S	S
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	F	D	A	M	R	Q	L	L	S	H	P	L	R	P	Q	A	V	F	T	G	N	D	A	M	A	V	G	V	Y	Q	A	L	Y	Q	A	E	L	Q	V	P	Q	D	I	A	V	I	G	Y	D	D	I	E	L	A	S	F	M	T	P	P	L	T	T	I	H	Q	P	K	D	E	L	G	E	L	A	I	D	V
Query Conservation
Alig confidence																																																												.	.
Template Conservation																																																												.	.
Template Sequence		H	N	F	E	V	A	K	E	L	L	E	T	H	P	D	L	T	A	V	L	C	T	V	D	A	L	A	F	G	V	L	E	Y	L	K	S	V	G	K	S	A	P	A	D	L	S	L	T	G	F	D	G	T	H	M	A	L	A	.	.	R	D	L	T	T	V	I	Q	P	N	K	L	K	G	F	K	A	G	E	T
Template Known Secondary structure															T	T							S	S														T	T			T	T	T	T															.	.	T	T
Template Predicted Secondary structure																																																												.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.			.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	H	R	I	T	Q	P	T	L	Q	Q	Q	R	L	Q	L	T	P	I	L	M	E	R	G	S
Query Conservation
Alig confidence														.
Template Conservation														.
Template Sequence		L	L	K	M	I	D	K	E	Y	V	E	P	.	E	V	E	L	E	T	S	F	H	P	G	S	T
Template Known Secondary structure							T	T					S	.												S
Template Predicted Secondary structure														.
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.		.	.	.	.	.	.	350	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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