Job Description P0ACQ0 Confidence 100.00% Date Thu Jan 5 11:18:41 GMT 2012 Rank 33 Aligned Residues 257 % Identity 23% Template c3clkB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcription regulator; PDBTitle: crystal structure of a transcription regulator from lactobacillus2 plantarum Resolution 2.08 Å

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		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	T	A	S	T	N	P	F	Y	S	E	L	V	R	G	V	E	R	S	C	F	E	R	G	Y	S	L	V	L	C	N	T	E	G	D	E	Q	R	M	N	R	N	L	E	T	L	M	Q	K	R	V	D	G	L	L	L	L	C	T	E	T	H	Q	P	S	R	E	I	M	Q	R	Y	P	T	V	P	T	V	M
Query Conservation
Alig confidence																																			.	.	.	.	.																																					.	.
Template Conservation																																			.	.	.	.	.																																					.	.
Template Sequence		V	I	A	A	V	V	S	N	F	A	Q	Q	I	L	D	G	I	Q	E	E	A	H	K	N	G	Y	N	L	I	I	V	Y	E	.	.	.	.	.	E	Q	K	H	A	L	L	T	A	I	E	R	P	V	X	G	I	L	L	L	S	I	A	L	T	D	D	N	L	Q	L	L	Q	S	S	D	.	.	V	P	Y	C
Template Known Secondary structure																							T	T	T	T									.	.	.	.	.												S			S						S														T	T	.	.
Template Predicted Secondary structure																																			.	.	.	.	.																																					.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.						.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	W	A	P	F	D	G	D	S	D	L	I	Q	D	N	S	L	L	G	G	D	L	A	T	Q	Y	L	I	D	K	G	H	T	R	I	A	C	I	T	G	P	L	D	K	T	P	A	R	L	R	L	E	G	Y	R	A	A	M	K	R	A	G	L	N	I	P	D	G	Y	E	V	T	G	D	F	E	F	N	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	S	X	G	F	D	D	D	R	P	F	I	S	S	D	D	E	D	I	G	Y	Q	A	T	N	L	L	I	N	E	G	H	R	Q	I	G	I	A	G	I	D	Q	Y	P	Y	T	G	R	K	R	L	A	G	Y	K	K	A	L	K	E	A	N	I	A	I	N	Q	E	W	I	K	P	G	D	Y	S	Y	T	S
Template Known Secondary structure				S				S	S	S																					T	T	T			S					S				S	S																	T	T					G	G	G						S	S
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	D	A	M	R	Q	L	L	S	H	P	L	R	P	Q	A	V	F	T	G	N	D	A	M	A	V	G	V	Y	Q	A	L	Y	Q	A	E	L	Q	V	P	Q	D	I	A	V	I	G	Y	D	D	I	E	L	A	S	F	M	T	P	P	L	T	T	I	H	Q	P	K	D	E	L	G	E	L	A	I	D	V	L
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		G	E	Q	A	X	K	A	F	G	K	.	N	T	D	L	T	G	I	I	A	A	S	D	X	T	A	I	G	I	L	N	Q	A	S	S	F	G	I	E	V	P	K	D	L	S	I	V	S	I	D	G	T	E	X	C	K	I	T	R	P	Q	L	T	S	I	S	Q	D	F	F	Q	X	G	V	T	G	V	Q	Q	I
Template Known Secondary structure											T	.	T				S					S	S														T	T			T	T	T	T										G	G	G	G	S	S	S	S
Template Predicted Secondary structure												.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		305	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		I	H	R	I	T	Q	P	.	T	L	Q	Q	Q	R	L	Q	L	T	P	I	L	M	E	R	G	S
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence		H	Q	S	V	K	N	G	S	N	R	I	V	S	Q	Q	F	I	P	V	N	P	V	I	R	K	S
Template Known Secondary structure							T	S																		S	S
Template Predicted Secondary structure
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions