Job Description P0ACQ0 Confidence 100.00% Date Thu Jan 5 11:18:41 GMT 2012 Rank 1 Aligned Residues 329 % Identity 31% Template c1zvvA_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:glucose-resistance amylase regulator; PDBTitle: crystal structure of a ccpa-crh-dna complex Resolution 2.98 Å

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		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		M	A	.	T	M	K	D	V	A	R	L	A	G	V	S	T	S	T	V	S	H	V	I	N	K	D	R	F	V	S	E	A	I	T	A	K	V	E	A	A	I	K	E	L	N	Y	A	P	S	A	L	A	R	S	L	K	L	N	Q	T	H	T	I	G	M	L	I	T	A	S	T	N	P	F	Y	S	E	L	V	R
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		M	N	V	T	I	Y	D	V	A	R	E	A	S	V	S	M	A	T	V	S	R	V	V	N	G	N	P	N	V	K	P	S	T	R	K	K	V	L	E	T	I	E	R	L	G	Y	R	P	N	A	V	A	R	G	L	A	S	K	K	T	T	T	V	G	V	I	I	P	D	I	S	N	I	F	Y	A	E	L	A	R
Template Known Secondary structure				S		S							T	T	S											T		S		S																T													T			S							S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	E	R	S	C	F	E	R	G	Y	S	L	V	L	C	N	T	E	G	D	E	Q	R	M	N	R	N	L	E	T	L	M	Q	K	R	V	D	G	L	L	L	L	C	T	E	T	H	Q	P	S	R	E	I	M	Q	R	Y	P	T	V	P	T	V	M	M	D	W	A	P	F	D	G	D	S	D	L	I	Q	D
Query Conservation
Alig confidence																																																		.
Template Conservation																																																		.
Template Sequence		G	I	E	D	I	A	S	M	Y	K	Y	N	I	I	L	S	N	S	D	Q	N	Q	D	K	Q	L	H	L	L	N	N	M	L	G	K	Q	V	D	G	I	I	F	M	S	G	N	V	T	.	E	E	H	V	E	E	L	K	K	S	P	V	P	V	V	L	A	A	S	I	E	S	T	N	Q	I	P	S	V	T	I
Template Known Secondary structure										T	T									T	T																T		S							S				.								T	T		S	S						S				T	T			S
Template Predicted Secondary structure																																																		.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		N	S	L	L	G	G	D	L	A	T	Q	Y	L	I	D	K	G	H	T	R	I	A	C	I	T	G	P	L	D	K	T	P	.	A	R	L	R	L	E	G	Y	R	A	A	M	K	R	A	G	L	N	I	P	D	G	Y	E	V	T	G	D	F	E	F	N	G	G	F	D	A	M	R	Q	L	L	S	H	P	L	R
Query Conservation																																		.
Alig confidence																																		.
Template Conservation
Template Sequence		D	Y	E	Q	A	A	F	D	A	V	Q	S	L	I	D	S	G	H	K	N	I	A	F	V	S	G	T	L	E	E	P	I	N	H	A	K	K	V	K	G	Y	K	R	A	L	T	E	S	G	L	P	V	R	D	S	Y	I	V	E	G	D	Y	T	Y	D	S	G	I	E	A	V	E	K	L	L	E	E	D	E	K
Template Known Secondary structure																	T	T									S		T	T	S					T	T													T					T	T	S						S	S													S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	A	V	F	T	G	N	D	A	M	A	V	G	V	Y	Q	A	L	Y	Q	A	E	L	Q	V	P	Q	D	I	A	V	I	G	Y	D	D	I	E	L	A	S	F	M	T	P	P	L	T	T	I	H	Q	P	K	D	E	L	G	E	L	A	I	D	V	L	I	H	R	I	T	Q	P	T	L	Q	Q	Q	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	T	A	I	F	V	G	T	D	E	M	A	L	G	V	I	H	G	A	Q	D	R	G	L	N	V	P	N	D	L	E	I	I	G	F	D	N	T	R	L	S	T	M	V	R	P	Q	L	T	S	V	V	Q	P	M	Y	D	I	G	A	V	A	M	R	L	L	T	K	Y	M	N	K	E	T	V	D	S	S	I	V
Template Known Secondary structure			S					S	S														T	T			T	T	T	T										T	T	T	T	T	S	S	S																									T					S		S	S
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	T	P	I	L	M	E	R	G	S	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	P	H	R	I	E	F	R	Q	S	T
Template Known Secondary structure											T	T
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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