Job Description P27829 Confidence 100.00% Date Thu Jan 5 11:44:05 GMT 2012 Rank 10 Aligned Residues 360 % Identity 24% Template c3plnA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:udp-glucose 6-dehydrogenase; PDBTitle: crystal structure of klebsiella pneumoniae udp-glucose 6-dehydrogenase2 complexed with udp-glucose Resolution 1.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70			.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.
Query SS confidence																																																																							.	.
Query Sequence		S	F	A	T	I	S	V	I	G	L	G	Y	I	G	L	P	T	A	A	A	F	A	S	R	Q	K	Q	V	I	G	V	D	I	N	Q	H	A	V	D	T	I	N	R	G	E	I	H	I	V	E	P	D	L	A	S	V	V	K	T	A	V	E	G	G	F	L	R	A	S	.	.	T	T	P	V	E	A	D	A	W
Query Conservation																																																																							.	.
Alig confidence																									.																																														.	.
Template Conservation																									.
Template Sequence		E	F	M	K	I	T	I	S	G	T	G	Y	V	G	L	S	N	G	V	L	I	A	Q	.	N	H	E	V	V	A	L	D	I	V	Q	A	K	V	D	M	L	N	Q	K	I	S	P	I	V	D	K	E	I	Q	E	Y	L	A	E	K	P	L	N	F	R	A	T	T	D	K	H	D	A	Y	R	N	A	D	Y	V
Template Known Secondary structure		T	S									S												T	.	T	S							S										T	T			S	S												S								S							T	T		S
Template Predicted Secondary structure																									.
Template SS confidence
		998	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020		.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	A	V	P	T	P	F	K	G	D	H	E	P	D	M	T	Y	V	E	S	A	A	R	S	I	A	P	V	L	K	K	G	A	L	V	I	L	E	S	T	S	P	V	G	S	T	E	K	M	A	E	W	L	A	E	M	R	P	D	L	T	F	P	Q	Q	V	G	E	Q	A	D	V	N	I	A	Y	C	P	E
Query Conservation
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	I	A	T	P	T	D	Y	D	P	K	T	N	Y	F	N	T	S	T	V	E	A	V	I	R	D	V	T	E	I	N	P	N	A	V	M	I	I	K	S	T	I	P	V	G	F	T	R	D	I	K	E	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	D	N	V	I	F	S	P	E
Template Known Secondary structure											T	T	T	T																			T	T	S						S				T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.																	.	.	.	.	.	.	.	.	140	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.				.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.
Query SS confidence																																							.	.	.
Query Sequence		R	V	L	P	G	Q	V	M	V	E	L	I	K	N	D	R	V	I	G	G	M	T	P	V	C	S	A	R	A	S	E	L	Y	K	I	F	L	.	.	.	E	G	E	C	V	V	T	N	S	R	T	A	E	M	C	K	L	T	E	N	S	F	R	D	V	N	I	A	F	A	N	E	L	S	L	I	C	A	D	Q
Query Conservation																																							.	.	.
Alig confidence																																							.	.	.
Template Conservation
Template Sequence		F	L	R	E	G	R	A	L	Y	D	N	L	H	P	S	R	I	V	I	G	E	R	S	A	R	A	E	R	F	A	D	L	L	K	E	G	A	I	K	Q	D	I	P	T	L	F	T	D	S	T	E	A	E	A	I	K	L	F	A	N	T	Y	L	A	L	R	V	A	Y	F	N	E	L	D	S	Y	A	E	S	Q
Template Known Secondary structure					T	T	S							S		S					S	S		S															S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.			.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																				.	.																											.
Query SS confidence																				.	.																											.
Query Sequence		G	I	N	V	W	E	L	I	R	L	A	N	R	H	P	R	V	N	.	.	I	L	Q	P	G	P	G	V	G	G	H	C	I	A	V	D	P	W	F	I	V	A	Q	N	P	Q	.	Q	A	R	L	I	R	T	A	R	E	V	N	D	H	K	P	F	W	V	I	D	Q	V	K	A	A	V	A	D	C	L	A	A
Query Conservation																				.	.																											.
Alig confidence																				.	.																											.																								.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		G	L	N	S	K	Q	I	I	E	G	V	C	L	D	P	R	I	G	N	H	Y	N	N	P	S	F	G	Y	G	G	Y	C	L	P	K	D	T	K	Q	L	L	A	N	Y	E	S	V	P	N	N	I	I	A	A	I	V	D	A	N	R	T	R	K	D	F	I	A	D	S	I	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T												T	S	T	T	T		S	S	S					S	S			T	T	T												T	T	T	S			S																					.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		T	D	K	R	A	S	E	L	K	I	A	C	F	G	L	A	F	K	P	N	I	D	D	L	.	R	E	S	P	A	M	E	I	A	E	L	I	A	Q	W	H	S	G	E	T	L	V	V	E	P	N	I	H	Q	L	P	K	K	L	T	G	L	C	T	L	A	Q	L	D	E	A	L	A	T	A	D	V	L	V	M
Query Conservation																										.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.											.															.																.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.																.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	R	K	P	K	V	V	G	V	Y	R	L	S	S	I	Q	G	I	M	K	R	I	K	A	.	K	G	I	P	V	I	I	Y	E	P	V	M	Q	E	D	.	.	E	F	F	N	S	R	V	V	R	D	L	N	A	F	K	Q	E	A	D	V	I	I	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T			S	S																			.	T	T								T	T			S	S	.	.			T	T															S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.																.	.
Template SS confidence
																292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.			.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		393	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	D	H	S	Q	F	K	V	I	N	G	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	R	M	A	E	E	L	A	D	V	A	D	K
Template Known Secondary structure		S	S			G	G	G	G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions