Job Description P27829 Confidence 100.00% Date Thu Jan 5 11:44:05 GMT 2012 Rank 3 Aligned Residues 402 % Identity 33% Template c3g79A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ndp-n-acetyl-d-galactosaminuronic acid dehydrogenase; PDBTitle: crystal structure of ndp-n-acetyl-d-galactosaminuronic acid2 dehydrogenase from methanosarcina mazei go1 Resolution 2.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.					.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																										.	.												.	.	.	.														.	.																						.	.	.
Query SS confidence																										.	.												.	.	.	.														.	.																						.	.	.
Query Sequence		F	A	T	I	S	V	I	G	L	G	Y	I	G	L	P	T	A	A	A	F	A	S	R	Q	.	.	K	Q	V	I	G	V	D	I	N	Q	H	.	.	.	.	A	V	D	T	I	N	R	G	E	I	H	I	V	.	.	E	P	D	L	A	S	V	V	K	T	A	V	E	G	G	F	L	R	A	S	T	.	.	.
Query Conservation																										.	.												.	.	.	.														.	.																						.	.	.
Alig confidence																										.	.												.	.	.	.														.	.																						.	.	.
Template Conservation
Template Sequence		I	K	K	I	G	V	L	G	M	G	Y	V	G	I	P	A	A	V	L	F	A	D	A	P	C	F	E	K	V	L	G	F	Q	R	N	S	K	S	S	G	Y	K	I	E	M	L	N	R	G	E	S	P	L	K	G	E	E	P	G	L	E	E	L	I	G	K	V	V	K	A	G	K	F	E	C	T	P	D	F	S
Template Known Secondary structure											S	T	T											S	T	T												T	T	T	T	T						T	T	T				S	S			G	G	G											T	T						S		G	G
Template Predicted Secondary structure
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.			.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		T	P	V	E	A	D	A	W	L	I	A	V	P	T	P	F	.	.	K	G	D	H	E	P	D	M	T	Y	V	E	S	A	A	R	S	I	A	P	V	L	K	K	G	A	L	V	I	L	E	S	T	S	P	V	G	S	T	E	K	M	A	E	W	L	A	E	M	R	P	D	L	T	F	P	Q	Q	V	G	E	Q
Query Conservation																		.	.
Alig confidence																		.	.																																																						.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.
Template Sequence		R	I	S	E	L	D	A	V	T	L	A	I	Q	T	P	F	A	N	P	K	D	L	E	P	D	F	S	A	L	I	D	G	I	R	N	V	G	K	Y	L	K	P	G	M	L	V	V	L	E	S	T	I	T	P	G	T	T	E	G	M	A	K	Q	I	L	E	E	E	S	G	L	.	.	.	.	.	.	K	A	G
Template Known Secondary structure		G	G	G	G		S												S	S			S	S																			T	T							S				T	T	T	T	T	T													.	.	.	.	.	.		B	T
Template Predicted Secondary structure																																																																									.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.							.	170	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		A	D	V	N	I	A	Y	C	P	E	R	V	L	P	G	Q	V	M	V	E	L	I	K	N	D	R	V	I	G	G	M	T	P	V	C	S	A	R	A	S	E	L	Y	K	I	F	L	E	G	.	E	C	V	V	T	N	S	R	T	A	E	M	C	K	L	T	E	N	S	F	R	D	V	N	I	A	F	A	N	E
Query Conservation																																																			.
Alig confidence																																																			.
Template Conservation
Template Sequence		E	D	F	A	L	A	H	A	P	E	R	V	M	V	G	R	L	L	K	N	I	R	E	H	D	R	I	V	G	G	I	D	E	A	S	T	K	R	A	V	E	L	Y	S	P	V	L	T	V	G	Q	V	I	P	M	S	A	T	A	A	E	V	T	K	T	A	E	N	T	F	R	D	L	Q	I	A	A	I	N	Q
Template Known Secondary structure		T	T	B											T	T	S								S							S	S												G	G	G		S	S
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.			250	.	.	.	.			.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.											.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																							.	.						.	.																													.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.						.	.																													.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	L	I	C	A	D	Q	G	I	N	V	W	E	L	I	R	L	A	N	R	.	.	H	P	R	V	N	.	.	I	L	Q	P	G	P	G	V	G	G	H	C	I	A	V	D	P	W	F	I	V	A	Q	N	P	Q	Q	A	.	.	.	.	.	.	.	.	.	.	R	L	I	R	T	A	R	E	V	N	D	H
Query Conservation																							.	.						.	.																													.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.						.	.																													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	L	Y	C	E	A	M	G	I	N	V	Y	D	V	R	T	G	V	D	S	L	K	G	E	G	I	T	R	A	V	L	W	P	G	A	G	V	G	G	H	C	L	T	K	D	T	Y	H	L	E	R	G	V	K	I	G	R	G	E	L	D	Y	P	E	G	A	D	S	I	Y	V	L	A	R	K	V	N	D	F
Template Known Secondary structure									T	T												T	S			S	S	S									S				S	S														T	T	S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	F	W	V	I	D	Q	V	K	A	A	V	A	D	C	L	A	A	T	D	K	R	A	S	E	L	K	I	A	C	F	G	L	A	F	K	P	N	I	D	D	L	R	E	S	P	A	M	E	I	A	E	L	I	A	Q	W	H	S	G	E	T	L	V	V	E	P	N	I	H	Q	L	P	K	K	L	T	G	L
Query Conservation
Alig confidence														.	.	.	.																																										.																.	.	.	.
Template Conservation														.	.	.	.																																										.																.	.	.	.
Template Sequence		M	P	A	H	M	Y	N	L	T	V	A	A	.	.	.	.	L	E	R	L	G	K	K	M	D	G	S	K	V	A	M	L	G	W	A	F	I	K	D	S	D	D	A	R	N	T	P	S	E	P	Y	R	D	L	C	L	K	.	A	G	A	S	V	M	V	H	D	P	Y	V	V	N	Y	.	.	.	.	P	G	V
Template Known Secondary structure														.	.	.	.			T	T	T			S	T	T								S	S	S	S	T	T		S			T	T		T											.		T								S	S				B	.	.	.	.	T	T	B
Template Predicted Secondary structure														.	.	.	.																																										.																.	.	.	.
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.					.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.		.	.	.	.	.	390	.	.	.	.	.	.	.	.	.					400	.	.
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.							.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.
Query Sequence		C	T	L	A	Q	L	D	E	A	L	A	T	A	D	V	L	V	M	L	V	D	H	S	Q	F	K	V	I	N	G	D	.	.	.	.	.	.	N	V	H	Q	Q	Y	V	V	D	A	K	G	V	W
Query Conservation																																	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.
Template Conservation
Template Sequence		E	I	S	D	N	L	E	E	V	V	R	N	A	D	A	I	V	V	L	A	G	H	S	A	Y	S	S	L	K	A	D	W	A	K	K	V	S	A	K	A	N	P	V	I	I	D	G	R	N	V	I
Template Known Secondary structure					S							T	T		S						S							S													S	S						S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.