Job Description P27829 Confidence 97.79% Date Thu Jan 5 11:44:05 GMT 2012 Rank 260 Aligned Residues 130 % Identity 13% Template c3fwzA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:inner membrane protein ybal; PDBTitle: crystal structure of trka-n domain of inner membrane protein ybal from2 escherichia coli Resolution 1.79 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																															.	.
Query SS confidence																																															.	.
Query Sequence		T	I	S	V	I	G	L	G	Y	I	G	L	P	T	A	A	A	F	A	S	R	Q	K	Q	V	I	G	V	D	I	N	Q	H	A	V	D	T	I	N	R	G	E	I	H	I	.	.	V	E	P	D	L	A	S	V	V	K	T	A	V	E	G	G	F	L	R	A	S	T	T	P	V	E	A	D	A	W	L	I	A
Query Conservation																																															.	.
Alig confidence																																															.	.														.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.
Template Sequence		H	A	L	L	V	G	Y	G	R	V	G	S	L	L	G	E	K	L	L	A	S	D	I	P	L	V	V	I	E	T	S	R	T	R	V	D	E	L	R	E	R	G	V	R	A	V	L	G	N	A	A	N	E	E	I	X	Q	L	A	H	.	.	.	.	.	.	.	.	.	.	L	E	C	A	K	W	L	I	L	T
Template Known Secondary structure									S													T	T								S											T	T						S		T	T	S							T	T	.	.	.	.	.	.	.	.	.	.	G	G	G		S
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.											.	480	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	T	P	F	K	G	D	H	E	P	D	M	T	Y	V	E	S	A	A	R	S	I	A	P	V	L	K	K	G	A	L	V	I	L	E	S	T	S	P	V	G	S	T	E	K	M	A	E	W	L	A	E	M	R	P	D	L	T	F	P	Q	Q	V	G	E	Q	A	D	V	N	I	A	Y	C	P	E	R	V	L
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.																												.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.																												.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	P	.	.	.	.	.	.	.	.	.	N	G	Y	E	A	G	E	I	V	A	S	A	R	A	K	N	P	D	I	E	I	I	A	R	A	H	Y	.	.	D	D	E	V	A	Y	I	T	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	N	Q	V	V	X	G	E	R	E	I
Template Known Secondary structure			S	.	.	.	.	.	.	.	.	.																	S	S	S							S	S	.	.										T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.																												.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		489	490										.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.			.	.	520	.	.	.	.	.	.	.																			.	.	530	.	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	Q	V	M	V	E	L	I	K	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	R	T	X	L	E	L	L	E	T	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		540	.	.	.	.	.	.	.	.	.	550

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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