Job Description P27829 Confidence 99.93% Date Thu Jan 5 11:44:05 GMT 2012 Rank 28 Aligned Residues 258 % Identity 12% Template c2uyyD_ PDB info PDB header:cytokine Chain: D: PDB Molecule:n-pac protein; PDBTitle: structure of the cytokine-like nuclear factor n-pac Resolution 2.5 Å

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		1	.	.	.			.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		M	S	F	A	.	.	T	I	S	V	I	G	L	G	Y	I	G	L	P	T	A	A	A	F	A	S	R	Q	K	Q	V	I	G	V	D	I	N	Q	H	A	V	D	T	I	N	R	G	E	I	H	I	V	E	P	D	L	A	S	V	V	K	T	A	V	E	G	G	F	L	R	A	S	T	T	P	V	E	A	D	A
Query Conservation						.	.
Alig confidence						.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	T	P	T	D	K	K	I	G	F	L	G	L	G	L	M	G	S	G	I	V	S	N	L	L	K	M	G	H	T	V	T	V	W	N	R	T	A	E	K	C	D	L	F	I	Q	E	G	A	R	L	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	P	A	E	V	V	S	T	C	D	I
Template Known Secondary structure						S	S								S													T	T								S	S	G	G	G	G						T	T					S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										S
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.																	.	.	.	.	320	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	I	A	V	P	T	P	F	K	G	D	H	E	P	D	M	T	Y	V	E	S	A	A	R	S	I	A	P	V	L	K	K	G	A	L	V	I	L	E	S	T	S	P	V	G	S	T	E	K	M	A	E	W	L	A	E	M	R	P	D	L	T	F	P	Q	Q	V	G	E	Q	A	D	V	N	I	A	Y	C	P
Query Conservation
Alig confidence										.	.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	F	A	C	V	S	D	P	.	.	.	.	.	.	K	A	A	K	D	L	V	L	G	P	S	G	V	L	Q	G	I	R	P	G	K	C	Y	V	D	M	S	T	V	D	A	D	T	V	T	E	L	A	Q	V	I	V	S	R	G	G	R	F	L	E	A	P	V	S	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S	S		.	.	.	.	.	.									S	T	T		G	G	G	G			T	T							S																	T	T										.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		327	.	.	330	.	.	.	.							.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	V	L	P	G	Q	V	M	V	E	L	I	K	N	D	R	V	I	G	G	M	T	P	V	C	S	A	R	A	S	E	L	Y	K	I	F	L	E	G	E	C	V	V	T	N	S	R	T	A	E	M	C	K	L	T	E	N	S	F	R	D	V	N	I	A	F	A	N	E	L	S	L	I	C	A	D	Q	G	I
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	G	N	Q	Q	L	S	N	D	G	M	L	V	I	L	A	A	G	D	R	G	L	Y	E	D	C	S	S	C	F	Q	A	M	G	K	T	S	F	F	L	G	E	V	G	N	A	A	K	M	M	L	I	V	N	M	V	Q	G	S	F	M	A	T	I	A	E	G	L	T	L	A	Q	V	T	G	Q
Template Known Secondary structure		.	.	.	.	.	S								T																T															S	S	T	T																														T	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.												.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.				.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Query Sequence		N	V	W	E	L	I	R	L	A	N	R	H	P	R	V	N	.	.	.	.	.	.	.	.	.	.	.	I	L	Q	P	G	P	G	V	G	G	H	C	I	A	V	D	P	W	F	.	.	.	I	V	A	Q	N	P	Q	Q	A	R	L	I	R	T	A	R	E	V	N	D	H	K	P	F
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Conservation
Template Sequence		S	Q	Q	T	L	L	D	I	L	N	Q	G	Q	L	A	S	I	F	L	D	Q	K	C	Q	N	I	L	Q	G	N	F	K	P	D	F	Y	L	K	Y	I	Q	K	D	L	R	L	A	I	A	L	G	D	A	V	N	H	P	T	P	M	A	A	A	A	N	E	V	Y	K	R	A	K	A
Template Known Secondary structure													S	T	T															T					S	S	B																		T	T
Template Predicted Secondary structure
Template SS confidence
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions