Job Description P27829 Confidence 98.63% Date Thu Jan 5 11:44:05 GMT 2012 Rank 135 Aligned Residues 151 % Identity 17% Template c2ldxA_ PDB info PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:apo-lactate dehydrogenase; PDBTitle: characterization of the antigenic sites on the refined 3-2 angstroms resolution structure of mouse testicular lactate3 dehydrogenase c4 Resolution 2.96 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.						.	.	.	70	.	.	.
Predicted Secondary structure																													.	.																																								.	.	.	.	.
Query SS confidence																													.	.																																								.	.	.	.	.
Query Sequence		M	S	F	A	T	I	S	V	I	G	L	G	Y	I	G	L	P	T	A	A	A	F	A	S	R	Q	K	.	.	Q	V	I	G	V	D	I	N	Q	H	A	V	D	T	I	N	R	G	E	I	H	I	V	E	P	D	L	A	S	V	V	K	T	A	V	E	G	G	F	.	.	.	.	.	L	R	A	S	T	T	P
Query Conservation																													.	.																																								.	.	.	.	.
Alig confidence																													.	.																	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	R	C	K	I	T	V	V	G	V	G	D	V	G	M	A	C	A	I	S	I	L	L	K	G	L	A	D	E	L	A	L	V	D	A	D	T	D	K	L	R	G	E	A	.	.	.	.	.	.	.	.	.	.	.	L	D	L	Q	H	G	S	L	F	L	S	T	P	K	I	V	F	G	K	D	Y	N	V	S
Template Known Secondary structure													S												T	T	T	S		S							S										.	.	.	.	.	.	.	.	.	.	.						T	T	T	T		S								S	S	G	G	G	G
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.												.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.							.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.
Query Sequence		V	E	A	D	A	W	L	I	A	V	P	T	P	F	K	G	D	H	E	.	.	.	.	.	.	P	D	M	T	Y	V	E	S	A	A	R	S	I	A	P	V	L	K	K	G	A	L	V	I	L	E	S	T	S	P	V	G	S	T	E	K	M	A	E	W	L	A	E	M	R	P	D	L	T	F	P	Q	Q	V	G
Query Conservation																					.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.																												.	.																	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.	.																	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	N	S	K	L	V	I	I	T	A	G	A	R	M	V	S	G	Q	T	R	L	D	L	L	Q	R	N	V	A	I	M	K	A	I	V	P	G	V	I	Q	N	S	P	D	C	K	I	I	V	V	T	N	.	.	P	V	D	I	L	T	Y	V	V	W	K	I	S	G	F	P	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T									S					T	T	T		S	S		T	T											T	T	T					S	T	T							S	S	.	.	S														S		.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																						.	.																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	A	D	V	N	I	A	Y	C	P	E	R	V	L	P	G	Q	V	M	V	E	L	I	K	N	D	R	V	I	G	G	M	T	P	V	C	S	A	R	A	S	E	L	Y	K	I	F	L	E	G	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	R	V	I	G	S	G	C	N	L	D	S	A	R	F	R	Y	L	I	G	E	K	L	G	V	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T					T	T																T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																											154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions