Phyre 2 alignment of P27829 with c1z82A

Job Description P27829
Confidence 99.67% Date Thu Jan 5 11:44:05 GMT 2012

Rank 58 Aligned Residues 253

% Identity 13% Template c1z82A_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase; PDBTitle: crystal structure of glycerol-3-phosphate dehydrogenase (tm0378) from2 thermotoga maritima at 2.00 a resolution

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	T	I	S	V	I	G	L	G	Y	I	G	L	P	T	A	A	A	F	A	S	R	Q	K	Q	V	I	G	V	D	I	N	Q	H	A	V	D	T	I	N	R	G	E	I	H	I	V	E	P	D	L	A	S	V	V	K	T	A	V	E	G	G	F	L	R	A	S	T	T	P	V	E	A	D	A	W	L	I	A	V
Query Conservation
Alig confidence																																																			.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.
Template Sequence	X	R	F	F	V	L	G	A	G	S	W	G	T	V	F	A	Q	X	L	H	E	N	G	E	E	V	I	L	W	A	R	R	K	E	I	V	D	L	I	N	V	S	H	T	S	P	Y	V	E	E	.	.	.	.	.	.	S	K	I	T	V	R	A	T	N	D	L	E	E	I	K	K	E	D	I	L	V	I	A	I
Template Known Secondary structure									S													T	T								S	S											S		B	T	T	B	T	T	.	.	.	.	.	.					S				S		G	G	G			T	T							S
Template Predicted Secondary structure																																																			.	.	.	.	.	.
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.							.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.

	84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	T	P	F	K	G	D	H	E	P	D	M	T	Y	V	E	S	A	A	R	S	I	A	P	V	L	K	K	G	A	L	V	I	L	E	S	T	S	P	V	G	S	T	E	K	M	A	E	W	L	A	E	M	R	P	D	L	T	F	P	Q	Q	V	G	E	Q	A	D	V	N	I	A	Y	C	P	E	R	V	L	P
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.													.	.																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.													.	.																													.	.	.	.	.	.	.	.	.	.	.
Template Sequence	P	V	.	.	.	.	.	.	.	.	.	.	Q	Y	I	R	E	H	L	L	R	L	P	V	.	.	K	P	S	X	V	L	N	L	S	K	G	I	E	I	K	T	G	K	R	V	S	E	I	V	E	E	I	L	.	.	.	.	.	.	.	.	.	.	.	G	C	P	Y	A	V	L	S	G	P	S	H	A	E	E
Template Known Secondary structure		G	.	.	.	.	.	.	.	.	.	.	G	G						T	T		S	S	.	.			S											T	T	T												T	.	.	.	.	.	.	.	.	.	.	.									S	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.													.	.																													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	77	.											.	80	.	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.												.	120	.	.	.	.	.	.	.	.	.	130	.	.	.

	164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.																		.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	G	Q	V	M	V	E	L	I	K	N	D	R	V	I	G	G	M	T	P	V	C	S	A	R	A	S	E	L	Y	K	I	F	L	E	G	E	C	V	V	T	N	S	R	T	A	E	M	C	K	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	N	S	F	R	D	V	N	I	A	F	A
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.														.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.														.	.
Template Sequence	V	A	K	.	.	.	.	K	L	P	T	A	V	T	L	A	G	E	N	S	.	.	K	E	L	Q	K	R	I	S	T	E	Y	F	R	V	Y	T	C	E	D	V	V	G	V	E	I	A	G	A	L	K	N	V	I	A	I	A	A	G	I	L	D	G	F	G	G	W	D	N	A	K	A	A	L	E	T	R	G	I
Template Known Secondary structure			T	.	.	.	.	T										T	T		.	.										S	S							S																									T	T
Template Predicted Secondary structure				.	.	.	.														.	.
Template SS confidence
	134	.	.					.	.	.	140	.	.	.	.	.	.	.	.	.			150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.

	227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.									.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.																		.	.	.	.	.	.	.	280	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	N	E	L	S	L	I	C	A	D	Q	G	I	N	V	W	E	.	.	.	.	.	.	.	.	L	I	R	L	A	N	R	H	P	R	V	N	I	L	Q	P	G	P	G	V	G	G	H	C	I	A	V	D	P	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	I	V	A	Q	N	P	Q	Q
Query Conservation																	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	Y	E	I	A	R	F	G	X	F	F	G	A	D	Q	K	T	F	X	G	L	A	G	I	G	D	L	X	V	T	C	N	S	R	Y	S	R	N	R	R	F	G	E	L	I	A	R	G	F	N	P	L	K	L	L	E	S	S	N	Q	V	V	E	G	A	F	T	V	K	A	V	X	K	I	A	K	E	N	K	I	D
Template Known Secondary structure										T	T							T	S	T	T	T											T	T													T									T		S	S			T															T	T
Template Predicted Secondary structure
Template SS confidence
	208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.

	282	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	R	L	I	R	T	A	R	E	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence	X	P	I	S	E	E	V	Y	R	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	288	.	290	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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