Job Description P27829 Confidence 99.79% Date Thu Jan 5 11:44:05 GMT 2012 Rank 42 Aligned Residues 268 % Identity 15% Template c1yj8C_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:glycerol-3-phosphate dehydrogenase; PDBTitle: initial structural analysis of plasmodium falciparum glycerol-3-2 phosphate dehydrogenase Resolution 2.85 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.										30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.
Query Sequence		T	I	S	V	I	G	L	G	Y	I	G	L	P	T	A	A	A	F	A	S	R	Q	K	Q	V	.	.	.	.	.	.	.	.	.	I	G	V	D	I	N	Q	H	A	V	D	T	I	N	R	G	E	I	H	I	V	E	P	D	L	A	S	V	V	K	T	A	V	E	G	G	F	L	R	A	S	T	T	P	V	E
Query Conservation																											.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.																													.	.
Template Conservation																																																																.	.
Template Sequence		K	I	S	I	L	G	S	G	N	W	A	S	A	I	S	K	V	V	G	T	N	A	K	N	N	Y	L	F	E	N	E	V	R	M	W	I	R	D	E	F	E	R	M	V	D	I	I	N	N	K	H	E	N	T	K	Y	L	K	G	V	P	L	.	.	P	H	N	I	V	A	H	S	D	L	A	S	V	I	N	D
Template Known Secondary structure									S																		T	T	B		S								S														B		T	T	T	S	T	T		B		.	.		T	T					S	S	S					T	T
Template Predicted Secondary structure																																																																.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.			.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																			.												.	.	.
Query SS confidence																																			.												.	.	.
Query Sequence		A	D	A	W	L	I	A	V	P	T	P	F	K	G	D	H	E	P	D	M	T	Y	V	E	S	A	A	R	S	I	A	P	V	.	L	K	K	G	A	L	V	I	L	E	S	.	.	.	T	S	P	V	G	S	T	E	K	M	A	E	W	L	A	E	M	R	P	D	L	T	F	P	Q	Q	V	G	E	Q	A	D
Query Conservation																																			.												.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.														.												.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.																																															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	D	L	L	I	F	I	V	P	C	.	.	.	.	.	.	.	.	.	.	Q	Y	L	E	S	V	L	A	S	I	K	E	I	K	I	A	S	H	A	K	A	I	S	L	T	K	G	F	I	V	K	K	N	Q	M	K	L	C	S	N	Y	I	S	D	F	L	.	.	.	.	.	.	.	.	.	.	.	N	I	P
Template Known Secondary structure			S									.	.	.	.	.	.	.	.	.	.											T						T	T									S					T	T													S	.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.																																															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.											.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.												160	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.																		.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	N	I	A	Y	C	P	E	R	V	L	P	G	Q	V	M	V	E	L	I	K	N	D	R	V	I	G	G	M	T	P	V	C	S	A	R	A	S	E	L	Y	K	I	F	L	E	G	E	C	V	V	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	T	A	E	M	C	K	L	T
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.
Template Sequence		C	S	A	L	S	G	A	N	I	A	M	D	V	A	M	E	N	F	S	E	A	.	.	.	T	I	G	G	N	D	K	D	S	L	V	I	W	Q	R	V	F	D	L	P	Y	F	K	I	N	C	V	N	E	T	I	E	V	E	I	C	G	A	L	K	N	I	I	T	L	A	C	G	F	C	D	G	L	N	L	P
Template Known Secondary structure								S								T	T						.	.	.					S														B	T	T							S		S																							T	T
Template Predicted Secondary structure																							.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.				.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.									.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.																																			.	.
Query SS confidence																														.	.	.	.	.	.	.	.																																			.	.
Query Sequence		E	N	S	F	R	D	V	N	I	A	F	A	N	E	L	S	L	I	C	A	D	Q	G	I	N	V	W	E	.	.	.	.	.	.	.	.	L	I	R	L	A	N	R	H	P	R	V	N	I	L	Q	P	G	P	G	V	G	G	H	C	I	A	V	D	P	W	F	I	V	A	.	.	Q	N	P	Q	Q	A	R	L
Query Conservation																														.	.	.	.	.	.	.	.																																			.	.
Alig confidence																														.	.	.	.	.	.	.	.																																			.	.
Template Conservation
Template Sequence		T	N	S	K	S	A	I	I	R	N	G	I	N	E	M	I	L	F	G	K	V	F	F	Q	K	F	N	E	N	I	L	L	E	S	C	G	F	A	D	I	I	T	S	F	L	A	G	R	N	A	K	C	S	A	E	F	I	K	S	T	P	K	K	T	W	E	E	L	E	N	E	I	L	K	G	Q	K	L	Q	G
Template Known Secondary structure																								S	S				G	G	G	G	G	S	T	T	T										S	S	S	S										T	T	T	T										T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	T	A	R	E	V	N	D	H	K	P	F	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	V	T	L	K	Y	V	Y	H	M	I	K	E	K
Template Known Secondary structure															T
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions