Job Description P27829 Confidence 99.74% Date Thu Jan 5 11:44:05 GMT 2012 Rank 48 Aligned Residues 264 % Identity 16% Template c1wpqB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:glycerol-3-phosphate dehydrogenase [nad+], PDBTitle: ternary complex of glycerol 3-phosphate dehydrogenase 12 with nad and dihydroxyactone Resolution 2.50 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.																.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	T	I	S	V	I	G	L	G	Y	I	G	L	P	T	A	A	A	F	A	S	R	Q	K	Q	V	I	G	V	D	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	H	A	V	D	T	I	N	R	G	E	I	H	I	V	E	P	D	L	A	S	V	V	K	T	A	V	E	G	G	F	L	R
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.
Template Sequence		K	K	V	C	I	V	G	S	G	N	W	G	S	A	I	A	K	I	V	G	G	N	A	A	Q	L	A	Q	F	D	P	R	V	T	M	W	V	F	E	E	D	I	G	G	K	K	L	T	E	I	I	N	T	Q	H	E	N	V	K	Y	L	P	G	H	K	L	P	P	N	V	V	A	V	P	.	.	.	.	.	D
Template Known Secondary structure										S																		S	S															T	T														T	T	T	S	T	T					T	T					S	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.						.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.
Query SS confidence																																																					.	.	.
Query Sequence		A	S	T	T	P	V	E	A	D	A	W	L	I	A	V	P	T	P	F	K	G	D	H	E	P	D	M	T	Y	V	E	S	A	A	R	S	I	A	P	V	L	K	K	G	A	L	V	I	L	E	S	.	.	.	T	S	P	V	G	S	T	E	K	M	A	E	W	L	A	E	M	R	P	D	L	T	F	P	Q	Q
Query Conservation																																																					.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.																									.	.	.																			.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.
Template Sequence		V	V	Q	A	A	E	D	A	D	I	L	I	F	V	V	P	H	.	.	.	.	.	.	.	.	.	.	Q	F	I	G	K	I	C	D	Q	L	K	G	H	L	K	A	N	P	T	G	I	S	L	I	K	G	V	D	E	G	P	N	G	L	K	L	I	S	E	V	I	G	E	R	L	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T		S						S			.	.	.	.	.	.	.	.	.	.											T	T		S		S	S														T	T													T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.											.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	E	Q	A	D	V	N	I	A	Y	C	P	E	R	V	L	P	G	Q	V	M	V	E	L	I	K	N	D	R	V	I	G	G	M	T	P	V	C	S	A	R	A	S	E	L	Y	K	I	F	L	E	G	E	C	V	V	T	N	S	R	T	A	E	M	C	K	L	T	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																									.	.	.																																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																									.	.	.
Template Sequence		.	.	.	G	I	P	M	S	V	L	M	G	A	N	I	A	S	E	V	A	D	E	K	F	C	E	T	.	.	.	T	I	G	C	K	D	P	A	Q	G	Q	L	L	K	E	L	M	Q	T	P	N	F	R	I	T	V	V	Q	E	V	D	T	V	E	I	C	G	A	L	K	N	V	V	A	V	G	A	G	F	C
Template Known Secondary structure		.	.	.	T								S	S								T	T						.	.	.					S														B	T	T							S
Template Predicted Secondary structure		.	.	.																									.	.	.
Template SS confidence
					141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.				.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
								215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	E	N	S	F	R	D	V	N	I	A	F	A	N	E	L	S	L	I	C	A	D	Q	G	I	N	V	W	E	L	I	R	L	A	N	R	H	P	R	V	N	I	L	Q	P	G	P	G	V	G	G	H	C	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	G	L	G	F	G	D	N	T	K	A	A	V	I	R	L	G	L	M	E	M	I	A	F	A	K	L	F	C	S	G	.	.	.	.	.	.	.	.	.	.	P	V	S	S	A	T	F	L	E	S	C	G	V	A	D	L	I	T	T	C	Y	G	G	R	N	R	K	V	A	E	A	F	A	R	T	G	K	S	I
Template Known Secondary structure				T	T																									S	S	S	.	.	.	.	.	.	.	.	.	.				G	G	G	G	G	S	T	T	T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.											.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
																					269	270	.	.	.	.	.	.	.	.	.	280			.	.	.	.	.	.	.	.	.	290	.			.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.												.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.												.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	P	W	F	I	V	A	Q	N	P	Q	.	.	Q	A	R	L	I	R	T	A	R	E	V	.	.	N	D	H	K	P	F	W	V	I	D	Q	V	K	A	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.												.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.												.	.
Template Conservation
Template Sequence		E	Q	L	E	K	E	L	L	N	G	Q	K	L	Q	G	P	E	T	A	R	E	L	Y	S	I	L	Q	H	K	G	L	V	D	K	F	P	L	F	M	A	V	Y	K	V	C	Y	E	G	Q	P	V	G	E	F	I	H	C	L	Q	N	H
Template Known Secondary structure									S	T	T																		T	T	T		G	G	G													T				G	G	G							T
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions