Job Description P27829 Confidence 100.00% Date Thu Jan 5 11:44:05 GMT 2012 Rank 8 Aligned Residues 395 % Identity 26% Template c1mv8A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:gdp-mannose 6-dehydrogenase; PDBTitle: 1.55 a crystal structure of a ternary complex of gdp-mannose2 dehydrogenase from psuedomonas aeruginosa Resolution 1.55 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.					.	.	.	.	.	.	.	80
Predicted Secondary structure																																																																						.	.	.	.
Query SS confidence																																																																						.	.	.	.
Query Sequence		T	I	S	V	I	G	L	G	Y	I	G	L	P	T	A	A	A	F	A	S	R	Q	K	Q	V	I	G	V	D	I	N	Q	H	A	V	D	T	I	N	R	G	E	I	H	I	V	E	P	D	L	A	S	V	V	K	T	A	V	E	G	G	F	L	R	A	S	T	T	.	.	.	.	P	V	E	A	D	A	W	L
Query Conservation																																																																						.	.	.	.
Alig confidence																																																																						.	.	.	.
Template Conservation
Template Sequence		R	I	S	I	F	G	L	G	Y	V	G	A	V	C	A	G	C	L	S	A	R	G	H	E	V	I	G	V	D	V	S	S	T	K	I	D	L	I	N	Q	G	K	S	P	I	V	E	P	G	L	E	A	L	L	Q	Q	G	R	Q	T	G	R	L	S	G	T	T	D	F	K	K	A	V	L	D	S	D	V	S	F
Template Known Secondary structure									S	T	T											T	T								S										T	T			S	S			T	T											T	T						S								T		S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.				.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.
Query SS confidence																																			.	.	.
Query Sequence		I	A	V	P	T	P	F	K	G	D	H	E	P	D	M	T	Y	V	E	S	A	A	R	S	I	A	P	V	L	K	K	G	A	.	.	.	L	V	I	L	E	S	T	S	P	V	G	S	T	E	K	M	A	E	W	L	A	E	M	R	P	D	L	T	F	P	Q	Q	V	G	E	Q	A	D	V	N	I	A	Y	C
Query Conservation																																			.	.	.
Alig confidence																																			.	.	.																												.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.
Template Sequence		I	C	V	G	T	P	S	K	K	N	G	D	L	D	L	G	Y	I	E	T	V	C	R	E	I	G	F	A	I	R	E	K	S	E	R	H	T	V	V	V	R	S	T	V	L	P	G	T	V	N	N	V	V	I	P	L	I	E	D	C	S	G	K	.	.	.	.	.	.	K	A	G	V	D	F	G	V	G	T	N
Template Known Secondary structure								B		T	T	S	S	B																	T	T			S								S				T	T					T										S		.	.	.	.	.	.		B	T	T	T	B
Template Predicted Secondary structure																																																																	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.							.	.	.	.	.	150	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		P	E	R	V	L	P	G	Q	V	M	V	E	L	I	K	N	D	R	V	I	.	G	G	M	T	P	V	C	S	A	R	A	S	E	L	Y	K	I	F	L	E	G	E	C	V	V	T	N	S	R	T	A	E	M	C	K	L	T	E	N	S	F	R	D	V	N	I	A	F	A	N	E	L	S	L	I	C	A	D	Q
Query Conservation																						.
Alig confidence																						.																			.
Template Conservation																																									.
Template Sequence		P	E	F	L	R	E	S	T	A	I	K	D	Y	D	F	P	P	M	T	V	I	G	E	L	D	K	Q	T	G	D	L	L	E	E	I	Y	R	E	L	.	D	A	P	I	I	R	K	T	V	E	V	A	E	M	I	K	Y	T	C	N	V	W	H	A	A	K	V	T	F	A	N	E	I	G	N	I	A	K	A	V
Template Known Secondary structure							T	T	S							S		S							S	S												T	T	S	.	S	S																																						T
Template Predicted Secondary structure																																									.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.					.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.				.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.																									.	.	.
Query SS confidence																				.	.	.	.																									.	.	.
Query Sequence		G	I	N	V	W	E	L	I	R	L	A	N	R	H	P	R	V	N	.	.	.	.	I	L	Q	P	G	P	G	V	G	G	H	C	I	A	V	D	P	W	F	I	V	A	Q	N	.	.	.	P	Q	Q	A	R	L	I	R	T	A	R	E	V	N	D	H	K	P	F	W	V	I	D	Q	V	K	A	A	V	A	D
Query Conservation																				.	.	.	.																									.	.	.
Alig confidence																				.	.	.	.																									.	.	.																													.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		G	V	D	G	R	E	V	M	D	V	I	C	Q	D	H	K	L	N	L	S	R	Y	Y	M	R	P	G	F	A	F	G	G	S	C	L	P	K	D	V	R	A	L	T	Y	R	A	S	Q	L	D	V	E	H	P	M	L	G	S	L	M	R	S	N	S	N	Q	V	Q	K	A	F	D	L	I	T	S	H	.	.	.
Template Known Secondary structure		T	S										T	T		T	T	T	T	T	S	S	T	T		S			S				S	S	S															T	T				T	T	G	G	G																	T	T	S	.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.													.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	L	A	A	T	D	K	R	A	S	E	L	K	I	A	C	F	G	L	A	F	K	P	N	I	D	D	L	R	E	S	P	A	M	E	I	A	E	L	I	A	Q	W	H	S	G	E	T	L	V	V	E	P	N	I	H	Q	L	P	K	K	L	T	.	.	.	.	.	.	.	.	.	.	.	.	G	L	C	T	L
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																		.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																																		.
Template Sequence		.	.	.	.	.	.	.	.	.	D	T	R	K	V	G	L	L	G	L	S	F	K	A	G	T	D	D	L	R	E	S	P	L	V	E	L	A	E	M	L	I	G	.	K	G	Y	E	L	R	I	F	D	R	N	V	E	Y	A	R	V	H	G	A	N	K	E	Y	I	E	S	K	I	P	H	V	S	S	L	L	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	S										S	S	S	T	T					T	T													.	T	T														T	T	S	S	S								T	S					T	T	B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																		.
Template SS confidence
											312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	L	D	E	A	L	A	T	A	D	V	L	V	M	L	V	D	H	S	Q	F	K	V	I	N	G	D	N	V	H	Q	Q	Y	V	V	D	A	K	G	V	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	D	L	D	E	V	V	A	S	S	D	V	L	V	L	G	N	G	D	E	L	F	V	D	L	V	N	K	T	P	S	G	K	K	L	V	D	L	V	G	F	M
Template Known Secondary structure		S										S						S			G	G	G						S			T	T						S	S	S
Template Predicted Secondary structure
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.