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Job DescriptionP27829
Confidence98.36%DateThu Jan 5 11:44:05 GMT 2012
Rank171Aligned Residues162
% Identity16%Templatec1j4aA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:d-lactate dehydrogenase; PDBTitle: insights into domain closure, substrate specificity and2 catalysis of d-lactate dehydrogenase from lactobacillus3 bulgaricus
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60.........70.........80...
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Query Sequence  ATISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLASVVKTAVEGGFLRASTTPVEADAWLIAV
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Template Sequence  QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNP. ELEKKGYYVD. . . . . . . . . . . . . . . . . . SLDDLYKQADVISLHV
Template Known Secondary structure  S

STT

SS

.TT
B
S..................

S
S
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   147..150.........160.........170.........180. ........190. ........200.......
 
   84.....90.........100.........110.........120.........130.........140.........150.........160...
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Query Sequence  PTPFKGDHEPDMTYVESAARSIAPVLKKGALVILESTSPVGSTEKMAEWLAEMRPDLTFPQQVGEQADVNIAYCPERVLP
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Template Sequence  PDVPANVHMIN. . . . . . . . DESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFP
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GGGTT
BS........S
TT
S
GGGB
TSS

TT
TTTTTS

TTS

S
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   208.210........ .220.........230.........240.........250.........260.........270.........
 
   164.....170........ .180.........190..
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Query Sequence  GQVMVELIKNDRVIG. . . . . GMTPVCSARASELY
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Template Sequence  DARLADLIARPNVLVTPKTAFYTTHAVRNMVVKA
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TT
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   280.........290.........300.........310...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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