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Job DescriptionP27829
Confidence98.33%DateThu Jan 5 11:44:05 GMT 2012
Rank174Aligned Residues148
% Identity18%Templatec1b8vA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:protein (malate dehydrogenase); PDBTitle: malate dehydrogenase from aquaspirillum arcticum
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10 .........20....... ..30.........40.........50.........60.........
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Query Sequence  TISVIG. LGYIGLPTAAAFASRQK. . . . . . . QVIGVDINQHAVDTINRGEIHIVEPDLASVVKTAVEGGFLRA. . . . . . .
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Template Sequence  RVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQG. . . . . . . . . VMMEIDDCAFPLLAGMTAHADP
Template Known Secondary structure  STTSTTTTT
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   7..10.........20.........30.........40.........50..... ....60.........70.......
 
   70.........80.........90.. .......100.........110.........120.........130.........140...
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Query Sequence  STTPVEADAWLIAVPTPFKGDHE. . . . . . PDMTYVESAARSIAPVLKKGALVILESTSPVGSTEKMAEWLAEMRPDLTFP
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Template Sequence  MTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN. PANTNAYIAMK. . . . . . . . . . .
Template Known Secondary structure  TTT
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   78.80.........90.........100.........110.........120.........130.... .....140.....
 
   144.....150.........160.........170.........180.........190.......
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Query Sequence  QQVGEQADVNIAYCPERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLE
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . SAPSLPAKNFTAMLRLDHNRALSQIAAKTG
Template Known Secondary structure  ........................T
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GGG

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   146...150.........160.........170.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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