Phyre 2 alignment of P76043 with c3iupB

Job Description P76043
Confidence 100.00% Date Thu Jan 5 12:17:44 GMT 2012

Rank 28 Aligned Residues 339

% Identity 12% Template c3iupB_

PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:putative nadph:quinone oxidoreductase; PDBTitle: crystal structure of putative nadph:quinone oxidoreductase2 (yp_296108.1) from ralstonia eutropha jmp134 at 1.70 a resolution

Resolution 1.70 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.		.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure							.																																														.	.
Query SS confidence							.																																														.	.
Query Sequence	M	K	K	L	V	A	.	T	A	P	R	V	A	A	L	V	E	Y	E	D	R	A	I	L	A	N	E	V	K	I	R	V	R	F	G	A	P	K	H	G	T	E	V	V	D	F	R	A	A	S	P	F	.	.	I	D	E	D	F	N	G	E	W	Q	M	F	T	P	R	P	A	D	A	P	R	G	I	E	F	G
Query Conservation							.																																														.	.
Alig confidence							.																																	.													.	.
Template Conservation																																								.
Template Sequence	L	R	S	R	I	K	S	S	G	E	L	E	L	S	L	D	S	I	D	T	P	H	P	G	P	D	E	V	L	I	R	I	E	A	S	P	L	N	P	.	S	D	L	G	L	L	F	G	A	A	D	X	S	T	A	K	A	S	G	T	A	E	R	P	I	V	T	A	R	V	P	E	G	A	X	R	S	X	A	G
Template Known Secondary structure							T	T	S																T	T														.								T	T												S	S	S									G	G	G	G	G	G	G	G	G
Template Predicted Secondary structure																																								.
Template SS confidence
	7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.

	78	.	80	.					.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure					.	.	.	.																																																											.
Query SS confidence					.	.	.	.																																																											.
Query Sequence	K	F	Q	L	.	.	.	.	G	N	M	V	V	G	D	I	I	E	C	G	S	D	V	T	D	Y	A	V	G	D	S	V	C	G	Y	G	P	L	S	E	T	V	I	I	N	A	V	N	N	Y	K	L	R	K	M	P	Q	G	S	S	W	K	N	A	V	C	.	Y	D	P	A	Q	F	A	M	S	G	V	R	D
Query Conservation					.	.	.	.																																																											.
Alig confidence					.	.	.	.																																																											.
Template Conservation
Template Sequence	R	L	D	A	S	X	P	V	G	N	E	G	A	G	V	V	V	E	A	G	S	S	P	A	A	Q	A	L	X	G	K	T	V	A	A	I	G	G	A	X	Y	S	Q	Y	R	C	I	P	A	D	Q	C	L	V	L	P	E	G	A	T	P	A	D	G	A	S	S	F	V	N	P	L	T	A	L	G	X	V	E	T
Template Known Secondary structure	G	T	T							S											S	S					T	T	T	T								S			S	B	S						G	G	G						T	T							T	T	S	S
Template Predicted Secondary structure
Template SS confidence
	86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.

	153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	N	V	R	V	G	D	F	V	V	V	V	G	L	G	A	I	G	Q	I	A	I	Q	L	A	K	R	A	G	A	S	V	V	I	G	V	D	P	I	A	H	R	C	D	I	A	R	R	H	G	A	D	F	C	L	N	P	I	G	T	D	V	G	K	E	I	K	T	L	T	G	K	Q	G	A	D	V	I	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence	X	R	L	E	G	H	S	A	L	V	H	T	A	A	A	S	N	L	G	Q	X	L	N	Q	I	C	L	K	D	G	I	K	L	V	N	I	V	R	K	Q	E	Q	A	D	L	L	K	A	Q	G	A	V	H	V	C	N	A	A	S	P	T	F	X	Q	D	L	T	E	A	L	V	S	T	G	A	T	I	A	F	D
Template Known Secondary structure				T	T		S					S	S	T	T	S														T								S	S										T	T		S					T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
	166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.

	233	.	.	.	.	.	.	240	.	.	.	.	.	.																	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	T	S	G	Y	A	D	A	L	Q	S	A	L	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	Y	G	G	T	I	S	Y	V	A	F	A	K	P	F	A	E	G	F	N	L	G	R	E	A	H	F	N	N	A	K	I	V	F	S	R	A	C	S	E	P	N	P	D	Y	P	R	W	S
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Conservation																																																							.	.	.	.	.
Template Sequence	A	T	G	G	G	K	L	G	G	Q	I	L	T	C	X	E	A	A	L	N	K	S	A	R	E	Y	S	R	Y	G	S	T	T	H	K	Q	V	Y	L	Y	G	G	L	D	T	S	P	T	E	F	N	R	N	F	.	.	.	.	.	G	X	A	W	G	X	G	G	W	L	L	F	P	F	L	Q	K	I	G	R	E
Template Known Secondary structure	S					S																T			S			T	T			S	S										S											S	.	.	.	.	.		S
Template Predicted Secondary structure																																																							.	.	.	.	.
Template SS confidence
	246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.						300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

	297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.			.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence	R	K	R	I	E	E	T	C	W	E	L	L	M	N	G	Y	L	N	C	E	D	L	I	D	P	V	V	T	F	A	N	S	.	.	P	E	S	Y	M	Q	Y	V	D	Q	H	P	E	Q	S	I	K	M	G	V	T
Query Conservation																																	.	.
Alig confidence																			.	.													.	.														.	.
Template Conservation																			.	.																												.	.
Template Sequence	R	A	N	A	L	K	Q	R	V	V	A	E	L	K	T	T	F	A	.	.	S	H	Y	S	K	E	I	S	L	A	E	V	L	D	L	D	X	I	A	V	Y	N	K	R	A	T	G	.	.	E	K	Y	L	I	N
Template Known Secondary structure												T	T	T	T	T	T		.	.				S									T									T	T			T	T	.	.
Template Predicted Secondary structure																			.	.																												.	.
Template SS confidence
	321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.			.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.			.	.	.	.	370	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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