Phyre 2 alignment of P76043 with c2vz8B

Job Description P76043
Confidence 99.62% Date Thu Jan 5 12:17:44 GMT 2012

Rank 90 Aligned Residues 296

% Identity 14% Template c2vz8B_

PDB info PDB header:transferase Chain: B: PDB Molecule:fatty acid synthase; PDBTitle: crystal structure of mammalian fatty acid synthase

Resolution 3.2 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence	D	R	A	I	L	A	N	E	V	K	I	R	V	R	F	G	A	P	K	H	G	T	E	V	V	D	F	R	A	A	S	P	F	I	D	E	D	F	N	G	E	W	Q	M	F	T	P	R	P	A	D	A	P	R	.	G	I	E	F	G	K	F	Q	L	G	N	M	V	V	G	D	I	I	E	C	G	S	D	V	T
Query Conservation																																																							.
Alig confidence																						.											.	.																					.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.											.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	A	L	P	A	S	C	Q	D	R	L	C	S	V	Y	Y	T	S	L	N	F	R	.	D	V	M	L	A	T	G	K	L	S	.	.	P	D	S	I	P	G	K	W	L	T	R	D	C	M	L	G	M	E	F	S	G	R	D	A	S	G	R	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T	S	T	T	T													.							T	S	S		.	.	G	G	G			S			S		S	S												T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.											.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	1554	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.	.		.	.	.	.	.	1580	.	.	.	.			.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.

	98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.			.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence	D	Y	A	V	G	D	S	V	C	G	Y	G	P	L	S	E	T	V	I	I	N	A	V	N	N	Y	K	L	R	K	M	P	Q	G	S	S	W	K	N	A	V	C	Y	D	.	.	P	A	Q	F	A	M	S	G	V	R	D	A	N	V	R	V	G	D	F	V	V	V	V	G	L	G	A	I	G	Q	I	A	I	Q
Query Conservation																																													.	.
Alig confidence	.	.	.	.	.	.	.	.																																					.	.
Template Conservation	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	M	G	M	V	P	A	E	G	L	A	T	S	V	L	L	L	Q	H	A	T	W	E	V	P	S	T	W	T	L	E	E	A	A	S	V	P	I	V	Y	T	T	A	Y	Y	S	L	V	V	R	G	R	M	Q	P	G	E	S	V	L	I	H	S	G	S	G	G	V	G	Q	A	A	I
Template Known Secondary structure	.	.	.	.	.	.	.	.					S	S			S	B	S						G	G	G						T	T	S						T	T													T	T	T	T				T	T								S	S	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.
Template SS confidence
									1614	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.	.	.	.	.	.	.	.	1640	.	.	.	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.	.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.	.	.

	176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200					.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																										.	.	.	.
Query SS confidence																										.	.	.	.
Query Sequence	L	A	K	R	A	G	A	S	V	V	I	G	V	D	P	I	A	H	R	C	D	I	A	R	R	.	.	.	.	H	G	A	D	F	C	L	N	P	I	G	T	D	V	G	K	E	I	K	T	L	T	G	K	Q	G	A	D	V	I	I	E	T	S	G	Y	A	D	A	L	Q	S	A	L	R	G	L	A	Y	G	G
Query Conservation																										.	.	.	.
Alig confidence																										.	.	.	.																																				.
Template Conservation																																																																	.
Template Sequence	A	I	A	L	S	R	G	C	R	V	F	T	T	V	G	S	A	E	K	R	A	Y	L	Q	A	R	F	P	Q	L	D	E	T	C	F	A	N	S	R	D	T	S	F	E	Q	H	V	L	R	H	T	A	G	K	G	V	D	L	V	L	N	S	L	A	.	E	E	K	L	Q	A	S	V	R	C	L	A	Q	H	G
Template Known Secondary structure						T	T								S													T	T			S	T	T				S	S	S	S									T	T	T	T												.									T	T
Template Predicted Secondary structure																																																																	.
Template SS confidence
	1686	.	.	.	1690	.	.	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.	.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.	1740	.	.	.	.	.	.	.	.	.		1750	.	.	.	.	.	.	.	.	.	1760	.	.	.	.

	252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	I	S	Y	V	A	F	A	K	P	F	A	E	G	F	N	L	G	R	E	A	H	F	N	N	A	K	I	V	F	S	R	A	C	S	E	P	N	P	D	Y	P	R	W	S	R	K	R	I	E	E	T	C	W	E	L	L	M	N	G	Y	L	N	C	E	D	L	I	D	P	V	V	T	F	A	N	S	P	E	S
Query Conservation
Alig confidence																										.	.	.																																				.	.
Template Conservation																										.	.	.																																				.	.
Template Sequence	R	F	L	E	I	G	K	F	D	L	S	N	N	H	A	L	G	M	A	V	F	L	K	N	V	.	.	.	T	F	H	G	I	L	L	D	S	L	F	E	E	G	G	A	T	W	Q	E	V	S	E	L	L	K	A	G	I	Q	E	G	V	V	Q	.	.	P	L	K	C	T	V	F	P	R	T	K	V	E	A	A
Template Known Secondary structure												T	T					T	T	G	G	G	G	T		.	.	.							T					T	S																	T	T	T		S		.	.									S	S	T
Template Predicted Secondary structure																										.	.	.																																				.	.
Template SS confidence
	1765	.	.	.	.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.	.	.	.	.	.				1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.	.	.	.	.	1820	.	.	.	.			.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.

	332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	M	Q	Y	V	D	Q	H	P	E	Q	S	I	K	M	G	V	T	F
Query Conservation
Alig confidence					.	.
Template Conservation					.	.
Template Sequence	F	R	Y	M	.	.	A	Q	G	K	H	I	G	K	V	V	I	Q	V
Template Known Secondary structure					.	.		T	T			S	S						S
Template Predicted Secondary structure					.	.
Template SS confidence
	1840	.	.	.			.	.	.	.	.	.	1850	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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