Return to main results Retrieve Phyre Job Id

Job DescriptionP76043
Confidence100.00%DateThu Jan 5 12:17:44 GMT 2012
Rank52Aligned Residues312
% Identity17%Templatec1yb5A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:quinone oxidoreductase; PDBTitle: crystal structure of human zeta-crystallin with bound nadp
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1...... ..10.... .....20.........30.........40.........50. ........60.........70...
Predicted Secondary structure 

...


.














...














Query SS confidence 






. . .






.




































. . .





















Query Sequence  MKKLVAT. . . APRVAAL. VEYEDRAILANEVKIRVRFGAPKHGTEVVDFRAASPF. . . IDEDFNGEWQMFTPRPADAPRG
Query Conservation 


 
  ... 
  
  . 
 
 
     





 
 


   
     
    ... 
   
 
  
 
   
  
  
Alig confidence 






...






.























.











...





















Template Conservation 


 
    
    
    
 
 
 
   





 
 


 . 
     
        
 
 
    
 
   
     
Template Sequence  MRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNP. VETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASA
Template Known Secondary structure  SS
SSGGG




TT

.T
SS



SSB


S

TT
TT
Template Predicted Secondary structure 















.
















Template SS confidence 















































































   8.10.........20.........30.........40......... 50.........60.........70.........80......
 
   74.....80.........90.........100.........110.........120.........130......... 140.........150.
Predicted Secondary structure 










































..



Query SS confidence 

































































. .











Query Sequence  IEFGKFQLGNMVVGDIIECGSDVTDYAVGDSVCGYGPLSETVIINAVNNYKLRKMPQGSSWKNAVC. . YDPAQFAMSGVR
Query Conservation     
  
            
                                              ..            
Alig confidence 






........................


































..











Template Conservation         ........................                                 
               
Template Sequence  FKKGDRV. . . . . . . . . . . . . . . . . . . . . . . . FTSSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIH
Template Known Secondary structure 

TT
........................S

SS
SSBSGGG

TTS
TTTT
Template Predicted Secondary structure 



........................




























Template SS confidence 















































































   87..90... ......100.........110.........120.........130.........140..
 
   152.......160.........170.........180.........190.........200.........210.........220.........230.
Predicted Secondary structure 










































Query SS confidence 















































































Query Sequence  DANVRVGDFVVVVGLGAIGQIAIQLAKRAGASVVIGVDPIAHRCDIARRHGADFCLNPIGTDVGKEIKTLTGKQGADVII
Query Conservation                                                                                
 
Alig confidence 















































































Template Conservation           
         
                                                            
Template Sequence  SACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIII
Template Known Secondary structure  TS


TT
T
SSTT
SSTT
STTSTT
TT
Template Predicted Secondary structure 

































Template SS confidence 















































































   143......150.........160.........170.........180.........190.........200.........210.........220..
 
   232.......240.........250.........260.........270.........280.........290.........300.........310.
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  ETSGYADALQSALRGLAYGGTISYVAFAKPFAEGFNLGREAHFNNAKIVFSRACSEPNPDYPRWSRKRIEETCWELLMNG
Query Conservation     
               
 

  
                     
 
                         
   
Alig confidence 



.
























...





















.....



















Template Conservation      .              
     
    ...                
     .....            
  
   
Template Sequence  EMLA. NVNLSKDLSLLSHGGRVIVVGSRGT. . . IEINPRDTMAKESSIIGVTLFS. . . . . STKEEFQQYAAALQAGMEIG
Template Known Secondary structure  S
.



S
...



TTTT


GGG.....

T
Template Predicted Secondary structure 


.










...







.....



Template SS confidence 















































































   223... ...230.........240.........250. ........260.........270... ......280.........290...
 
   312.......320.........330.........340.........
Predicted Secondary structure 










Query SS confidence 





































Query Sequence  YLNCEDLIDPVVTFANSPESYMQYVDQHPEQSIKMGVT
Query Conservation   
    

     

    
   
         



 
Alig confidence 


..






















.








Template Conservation   
 ..
 
     
     
   
  
 .   




 
Template Sequence  WLK. . PVIGSQYPLEKVAEAHENIIHGS. GATGKMILL
Template Known Secondary structure 


..

GGGSS.

SS
Template Predicted Secondary structure 


..




.



Template SS confidence 





































   294.. ...300.........310......... 320........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions