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Job DescriptionP30130
Confidence100.00%DateThu Jan 5 11:45:50 GMT 2012
Rank2Aligned Residues468
% Identity100%Templatec3ohnA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:outer membrane usher protein fimd; PDBTitle: crystal structure of the fimd translocation domain
Resolution3.01 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   184.....190.........200.........210.........220.........230.........240.........250.........260...
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Query Sequence  AGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDRSSGSKNKWQHINTWLERDIIPLRSRLTL
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Template Sequence  AGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYN. . . . . . . SSNKWQHINTWLERDIIPLRSRLTL
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   139140.........150.........160.........170.........180...... ...190.........200.........210.
 
   264.....270.........280.........290.........300.........310.........320.........330.........340...
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Query Sequence  GDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGD
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Template Conservation 

  
 
         

   

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Template Sequence  GDGYTQGDIFDGINFRGAQLASDDN. . . . . . . . . . PVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGD
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   219220.........230.........240... ......250.........260.........270.........280........
 
   344.....350.........360.........370.........380.........390.........400.........410.........420...
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Query Sequence  LQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKTRFFQSTLLHGLPAGWTIYGGTQLADRYRAF
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Template Sequence  LQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYRAF
Template Known Secondary structure  SSS










TT


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   299300.........310.........320.........330.........340.........350.........360.........370........
 
   424.....430.........440.........450.........460.........470.........480.........490.........500...
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Query Sequence  NFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIE
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Template Sequence  NFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSL. . . GTNIQLVGYRYSTSGYFNFADTTYSRMNGT. . .
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TT


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   379380.........390.........400.........410.........420.. .......430.........440.........450..
 
   504.....510.........520.........530.........540.........550.........560.........570.........580...
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Query Sequence  TQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTK
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Template Conservation  .............             
   
      
    
                  
 
        

      
Template Sequence  . . . . . . . . . . . . . DYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTK
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   472.......480.........490.........500.........510.........520.........530........
 
   584.....590.........600.........610.........620.........630.........640.........650.........660...
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Query Sequence  NAWQKGRDQMLALNVNIPFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNS
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Template Sequence  NAWQKGRDQMLALNVNIPFA. . . . . . . . . . . . . . SASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNS
Template Known Secondary structure 
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   539540.........550........ .560.........570.........580.........590.........600....
 
   664.....670.........680.........690.........700.
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Query Sequence  GSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGV
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Template Conservation    
                  
            

 
Template Sequence  GSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGV
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   619620.........630.........640.........650......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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