Job Description P42591 Confidence 99.11% Date Thu Jan 5 12:01:37 GMT 2012 Rank 3 Aligned Residues 249 % Identity 14% Template d3prna_ SCOP info Transmembrane beta-barrels Porins Porin Resolution 1.90

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		49	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		R	F	Y	G	E	L	G	V	G	.	G	Y	M	D	L	E	G	E	N	K	H	K	Y	S	D	G	T	Y	I	E	G	G	L	E	M	K	Y	G	S	W	F	G	L	I	Y	G	E	G	W	T	V	Q	A	D	H	D	G	N	A	W	V	P	D	H	S	W	G	G	F	E	G	G	I	N	R	F	Y	G	G	Y
Query Conservation											.
Alig confidence											.																																													.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.
Template Sequence		S	L	N	G	Y	G	R	F	G	L	Q	Y	V	E	D	R	G	V	G	L	E	D	T	I	I	S	S	R	L	R	I	N	I	V	G	T	T	E	T	D	Q	G	V	T	F	G	A	K	L	R	M	Q	W	D	.	.	.	.	.	.	.	.	.	D	G	D	A	F	A	G	T	A	G	N	A	A	Q	F	W	T
Template Known Secondary structure															T	T		S	T	T			S																		T	T	S													.	.	.	.	.	.	.	.	.	T	T		G	G	G				B
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.										.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.																		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	T	N	D	G	T	E	I	M	L	S	L	R	Q	D	S	S	L	D	D	L	Q	W	W	G	D	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	P	D	L	G	Y	V	I	P	N	T	R	D	I	M	T	A	L	K	V	Q	N	L	S	G	N	F	R	Y	S	V	T	A	T	P	A
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.					.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.					.
Template Sequence		S	Y	N	G	V	T	.	V	S	V	G	.	N	V	D	T	A	F	D	S	V	A	L	T	Y	D	S	E	M	G	Y	E	W	S	S	F	G	D	A	Q	S	S	F	F	A	Y	N	S	K	Y	D	A	S	G	A	L	D	N	Y	N	G	I	A	V	T	Y	S	I	S	G	V	N	L	Y	L	S	Y	V	D	P
Template Known Secondary structure				T	T			.					.	S								S	S	S	T	T	T	T		B	T	T	T	T	B		T	T	S			S								S			T	T	S	T	T	T	T											S	S										T
Template Predicted Secondary structure								.					.
Template SS confidence
		74	.	.	.	.	.		80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		191	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		G	H	H	D	E	.	S	K	A	W	L	H	F	G	K	Y	D	R	Y	D	D	K	Y	T	Y	P	A	M	M	N	G	Y	I	Q	Y	D	L	A	E	G	I	T	W	M	N	G	L	E	I	T	D	G	T	G	Q	L	Y	L	T	G	L	L	T	P	N	F	A	A	R	A	W	H	H	T	G	R	A	D	G	L
Query Conservation							.
Alig confidence							.																			.	.														.	.	.	.	.																		.	.	.											.	.	.	.	.	.
Template Conservation																										.	.														.	.	.	.	.																		.	.	.											.	.	.	.	.	.
Template Sequence		D	Q	T	V	D	S	S	L	V	T	E	E	F	G	I	A	A	D	W	S	N	D	M	I	.	.	S	L	A	A	A	Y	T	T	D	A	G	G	I	.	.	.	.	.	V	D	N	D	I	A	F	V	G	A	A	Y	K	F	N	D	A	.	.	.	G	T	V	G	L	N	W	Y	D	N	.	.	.	.	.	.
Template Known Secondary structure		T	T	T	S		G	G	G	S													S	S		.	.									S	G	G	G		.	.	.	.	.	T	T													S	S	S	.	.	.											.	.	.	.	.	.
Template Predicted Secondary structure																										.	.														.	.	.	.	.																		.	.	.											.	.	.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.			.	.	.	.	180	.	.	.	.	.	.	.	.						.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		D	V	P	G	S	E	S	G	M	M	V	S	A	M	Y	E	A	L	K	G	V	Y	L	S	T	A	Y	T	Y	A	K	H	R	P	D	H	A	D	D	E	T	T	S	F	M	Q	F	G	I	W	Y	E	Y	G	G	G	.	R	F	A	T	A	F
Query Conservation																																																										.
Alig confidence																			.														.	.	.	.	.										.											.
Template Conservation																			.														.	.	.	.	.										.
Template Sequence		G	L	S	T	A	G	D	Q	V	T	L	Y	G	N	Y	A	F	.	G	A	T	T	V	R	A	Y	V	S	D	I	D	.	.	.	.	.	R	A	G	A	D	T	A	Y	G	.	I	G	A	D	Y	Q	F	A	E	G	V	K	V	S	G	S	V
Template Known Secondary structure		T	T	S	T	T		S											.	T	T												.	.	.	.	.	S	T	T							.									T	T
Template Predicted Secondary structure																			.														.	.	.	.	.										.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.						.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions