Job Description P42591 Confidence 98.97% Date Thu Jan 5 12:01:37 GMT 2012 Rank 4 Aligned Residues 305 % Identity 15% Template d2zfga1 SCOP info Transmembrane beta-barrels Porins Porin Resolution 1.59

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.						.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																.																	.	.	.	.	.
Query SS confidence																																.																	.	.	.	.	.
Query Sequence		I	T	S	T	S	S	P	S	F	R	F	Y	G	E	L	G	V	G	G	Y	M	D	L	E	G	E	N	K	H	K	.	Y	S	D	G	T	Y	I	E	G	G	L	E	M	K	Y	G	.	.	.	.	.	S	W	F	G	L	I	Y	G	E	G	W	T	V	Q	A	D	H	D	G	N	A	W	V	P	D	H	S	W
Query Conservation																																.																	.	.	.	.	.
Alig confidence																																.																	.	.	.	.	.				.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.
Template Sequence		I	Y	N	K	D	G	N	K	V	D	L	Y	G	K	A	V	G	L	H	Y	F	S	K	G	G	E	N	S	Y	G	G	N	G	D	M	T	Y	A	R	L	G	F	K	G	E	T	Q	I	N	S	D	L	T	G	Y	.	.	.	.	.	.	.	G	Q	W	E	Y	N	F	Q	G	N	N	S	E	G	A	D	A	Q
Template Known Secondary structure						T	T																				T	T	B	S	S		S																	S	S	S					.	.	.	.	.	.	.									S	S	S		S	S	T	T	T	T
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.								.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.						.	.	.	170	.	.	.	.	.						.	.	.	.	180	.	.
Predicted Secondary structure																			.																																					.	.	.	.	.										.	.	.	.	.
Query SS confidence																			.																																					.	.	.	.	.										.	.	.	.	.
Query Sequence		G	G	F	E	G	G	I	N	R	F	Y	G	G	Y	R	T	N	.	D	G	T	E	I	M	L	S	L	R	Q	D	S	S	L	D	D	L	Q	W	W	G	D	F	T	P	D	L	G	Y	V	I	P	N	T	R	.	.	.	.	.	D	I	M	T	A	L	K	V	Q	.	.	.	.	.	N	L	S	G	N	F	R
Query Conservation																			.																																					.	.	.	.	.										.	.	.	.	.
Alig confidence					.	.													.				.						.																											.	.	.	.	.										.	.	.	.	.
Template Conservation					.	.																	.						.
Template Sequence		T	G	N	.	.	K	T	R	L	A	F	A	G	L	K	Y	A	D	V	G	S	.	F	D	Y	G	R	.	N	Y	G	V	V	Y	D	A	L	G	Y	T	D	M	L	P	E	F	G	G	D	T	A	Y	S	D	D	F	F	V	G	R	V	G	G	V	A	T	Y	R	N	S	N	F	F	G	L	V	D	G	L	N
Template Known Secondary structure		T	T		.	.												T	T	T			.						.				T	T					T	T	T				S	S	S			T	T			T	T	S	T	T	S	S											S					T	S	T	T
Template Predicted Secondary structure					.	.																	.						.
Template SS confidence
		77	.	.			80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		Y	S	V	T	A	T	P	A	G	H	H	D	E	.	.	S	K	A	W	L	H	F	G	K	Y	D	R	Y	D	D	K	Y	T	Y	P	A	M	M	N	G	Y	I	Q	Y	D	L	A	E	G	I	T	W	M	N	G	L	E	I	T	D	G	T	G	Q	L	Y	L	T	G	L	L	T	P	N	F	A	A	R	A	W
Query Conservation															.	.
Alig confidence															.	.
Template Conservation
Template Sequence		F	A	V	Q	Y	L	G	K	N	E	R	D	T	A	R	R	S	N	G	D	G	V	G	G	S	I	S	Y	E	Y	E	G	F	G	I	V	G	A	Y	G	A	A	D	R	T	N	L	Q	E	A	Q	P	L	G	N	G	K	K	A	E	Q	W	A	T	G	L	K	Y	D	A	N	N	I	Y	L	A	A	N	Y	G
Template Known Secondary structure										B			S	S	S	T	T		B													T	T																		T	S	S	B				S														T	T
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.								.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.			.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330
Predicted Secondary structure																		.	.	.	.	.	.	.																											.	.																								.
Query SS confidence																		.	.	.	.	.	.	.																											.	.																								.
Query Sequence		H	H	T	G	R	A	D	G	L	D	V	P	G	S	E	S	.	.	.	.	.	.	.	G	M	M	V	S	A	M	Y	E	A	L	K	G	V	Y	L	S	T	A	Y	T	Y	A	K	H	R	.	.	P	D	H	A	D	D	E	T	T	S	F	M	Q	F	G	I	W	Y	E	Y	G	G	G	.	R	F	A	T	A
Query Conservation																		.	.	.	.	.	.	.																											.	.																								.
Alig confidence																		.	.	.	.	.	.	.																											.	.																								.
Template Conservation
Template Sequence		E	T	R	N	A	T	P	I	T	N	K	F	T	N	T	S	G	F	A	N	K	T	Q	D	V	L	L	V	A	Q	Y	Q	F	D	F	G	L	R	P	S	I	A	Y	T	K	S	K	A	K	D	V	E	G	I	G	D	V	D	L	V	N	Y	F	E	V	G	A	T	Y	Y	F	N	K	N	M	S	T	Y	V	D
Template Known Secondary structure					S		S					T	T	T	T						S														T	T	S																T	T	T																			T	T
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		331	.	.	.	.	.	.	.		.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		F	D	S	R	F	Y	M	K	.	N	A	S	H	D	P	S	D	Q	I	F	L	M	Q	Y	F	Y
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		Y	I	I	N	Q	I	D	S	D	N	K	L	G	V	G	S	D	D	T	V	A	V	G	I	V	Y
Template Known Secondary structure									T	T		T	T					B
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions