Job Description P42591 Confidence 98.31% Date Thu Jan 5 12:01:37 GMT 2012 Rank 8 Aligned Residues 253 % Identity 14% Template d2pora_ SCOP info Transmembrane beta-barrels Porins Porin Resolution 1.80

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		E	L	G	V	G	G	Y	M	D	L	E	G	E	N	K	H	K	.	Y	S	D	G	T	Y	I	E	G	G	L	E	M	K	Y	G	S	W	F	G	L	I	Y	G	E	G	W	T	V	Q	A	D	H	D	G	N	A	W	V	P	D	H	S	W	G	G	F	E	G	G	I	N	R	F	Y	G	G	Y	R	T	N	D
Query Conservation																			.
Alig confidence																			.																									.	.																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.																		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	V	K	L	S	G	D	A	R	M	G	V	M	Y	N	G	D	D	W	N	F	S	S	R	S	R	V	L	F	T	M	S	G	T	T	D	S	G	L	E	F	G	.	.	A	S	F	K	A	H	E	S	V	G	A	E	T	G	E	D	G	.	.	.	.	.	.	.	.	.	.	.	T	V	F	L	S	G	A	F
Template Known Secondary structure																	S	S																			T	T						.	.					G	G	G					T	T	T	S	S	S	.	.	.	.	.	.	.	.	.	.	.							T	T
Template Predicted Secondary structure																																												.	.																		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.			.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.												60	.	.	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.														.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Query Sequence		G	T	E	I	M	L	S	L	R	Q	D	S	S	L	D	D	L	Q	W	W	G	D	F	T	P	D	L	G	Y	V	I	P	N	T	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	I	M	T	A	L	K	V	Q	N	L	S	G	N	F	R	Y	S	V	T	A	T	P	A	G	H	H	D	E	.	S	K
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Alig confidence				.					.																													.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template Conservation				.					.
Template Sequence		G	K	.	I	E	M	G	.	D	A	L	G	A	S	E	A	L	F	G	D	L	Y	E	V	G	Y	T	D	L	D	D	R	G	G	N	D	I	P	Y	L	T	G	D	E	R	L	T	A	E	D	N	P	V	L	L	Y	T	Y	S	A	G	A	F	S	V	A	A	S	M	S	D	G	K	V	G	E	T	S	E	D
Template Known Secondary structure				.					.	S		B										S				T	T	T	T			T	T	S		S	S				S	S	B	T	T	S	S		B	T	T	B										T	T										S	B	S	T	T	S	S		B
Template Predicted Secondary structure				.					.
Template SS confidence
		68	.		70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.													.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	W	L	H	F	G	K	Y	D	R	Y	D	D	K	Y	T	Y	P	A	M	M	N	G	Y	I	Q	Y	D	L	A	E	G	I	T	W	M	N	G	L	E	I	T	D	G	T	G	Q	L	Y	L	T	G	L	L	T	P	N	F	A	A	R	A	W	H	H	T	.	.	.	.	.	.	.	.	.	.	.	.	G	R
Query Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.																				.																.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.																				.																.	.	.
Template Sequence		D	A	Q	E	M	A	V	A	A	A	Y	T	F	G	N	Y	.	.	T	V	G	L	G	Y	E	K	I	D	S	P	D	T	A	L	M	A	D	.	M	E	Q	L	E	L	A	A	I	A	K	F	G	A	T	.	.	.	N	V	K	A	Y	Y	A	D	G	E	L	D	R	D	F	A	R	A	V	F	D	L	T	P
Template Known Secondary structure															T	T		.	.												S		T	T	T	S			.													T	T		.	.	.																				T	T
Template Predicted Secondary structure																		.	.																				.																.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.				.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		A	D	G	L	D	V	P	G	S	E	S	G	M	M	V	S	A	M	Y	E	A	L	K	G	V	Y	L	S	T	A	Y	T	Y	A	K	H	R	P	D	H	A	D	D	E	T	T	S	F	M	Q	F	G	I	W	Y	E	Y	G	G	G	.	R	F	A	T	A	F
Query Conservation																																																														.
Alig confidence																							.																							.	.	.			.											.
Template Conservation																							.																							.	.	.			.
Template Sequence		V	A	A	A	A	T	A	V	D	H	K	A	Y	G	L	S	V	D	S	T	F	.	G	A	T	T	V	G	G	Y	V	Q	V	L	D	I	D	T	I	D	D	V	T	Y	.	.	.	Y	G	.	L	G	A	S	Y	D	L	G	G	G	A	S	I	V	G	G	I
Template Known Secondary structure			S	S																			.	T	T													T	T	T						.	.	.			.									T	T
Template Predicted Secondary structure																							.																							.	.	.			.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.				.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions